Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3524 143 3e-29 seq4035 138 1e-27 >seq3524 Length=35516 Score = 143 bits (158), Expect = 3e-29 Identities = 615/960 (64%), Gaps = 14/960 (1%) Strand=Plus/Plus Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 ||||| || || || || ||||| ||||||| | ||| ||| | || ||||| ||| Sbjct 11114 ACAGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCTCCGTG 11173 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || || || | |||||||| ||| | ||| || || || ||| || || ||| Sbjct 11174 CACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCA 11233 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 ||||| | || || | || || || || || | ||| || || | | ||| ||| Sbjct 11234 TCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCAAACCAC 11293 Query 63075 A-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC---TCTT-TCGTATAGTGT-A 63128 | | || | ||||| || | ||| | |||| | |||| ||||| || | | Sbjct 11294 AGCTGCTGG-GCCTTGATCACC---TTGCG-CGCCTTGCCACTCTTCTCGTAC-GTCTCA 11347 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 |||| | | || || ||||| || || | ||| ||||| || || | || || Sbjct 11348 TACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAG 11407 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 | || ||||| || ||||| | || ||| || | ||| || |||||||| |||| || Sbjct 11408 AACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGG 11467 Query 63249 GC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || || || || || | || | | ||| || || ||||| ||||| || Sbjct 11468 GCGTAGAACAAG-TCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAG 11526 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 |||| | | ||||| | ||||| || |||| ||| ||||| | | || || || Sbjct 11527 GAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTT 11586 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 | || ||||| || | ||| | || |||| || | || | || ||| || | || Sbjct 11587 GCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGAT 11646 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 ||||| || | || || | || ||| || ||| || || || ||| || Sbjct 11647 GCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGAT 11706 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 || | ||| || || ||||| | || ||||| || ||| | || | |||||||| Sbjct 11707 CGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCATA 11766 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 |||||| || ||| || || ||||| | || || || ||| || | || | || Sbjct 11767 GATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCG 11826 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 || || || || || | ||||| | ||||| || || || | || | || Sbjct 11827 CGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAG 11886 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 |||||| |||||||| || | ||| | ||| | ||| ||||| | || || ||||| Sbjct 11887 ATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCAT 11946 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| |||| || | || || || || || | || |||||| || || Sbjct 11947 GATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTC 12006 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || || || ||||| ||||||| || |||||||| || || ||||| |||| || Sbjct 12007 CAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTCTCGATCATAGATAATTGCCGAATT 12066 >seq4035 Length=10978 Score = 138 bits (152), Expect = 1e-27 Identities = 587/917 (64%), Gaps = 8/917 (1%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || |||| ||||| || || ||||| | | || ||| || || ||||| ||||| Sbjct 7195 GAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTCGTATACTGGATAATCTCCGTGCAC 7254 Query 62958 AGATTACTACACTTGA-TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 | || | | | || | || ||||||||||| ||||| ||||| |||||||| || Sbjct 7255 AAGTT-CGAGCTTCGAATCGTCCCTAAATTTTGCTGATTGCTCTTAAGATTACACGCGTC 7313 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 || | || || | || || || ||||| ||||| || || | || || ||| | Sbjct 7314 TTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTGTGAGTCCAGGATGGCGAACCACAG 7373 Query 63077 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136 | || | || | | | ||| | ||| || |||||||| | ||||| Sbjct 7374 GTCTTGCGCACGCACTGTCTTTTTTACTTTCCCAGCTTTTTCGTATTGCAGATACAGGAC 7433 Query 63137 TTCGAACTCGTCTCCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 || ||||| | | || ||| | | |||| |||||||| | ||| |||||||||| | Sbjct 7434 CTCAAACTCTT-TGCCATGACAGTCGCCCAAGCCAGGACACTGATCAGGACACATCAGTG 7492 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| || || |||| ||||| |||||||| | ||| ||||||||||| | || Sbjct 7493 ACCAAATCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATCCAAAGCCCGTAAA 7552 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314 | || || | | | ||| || || || ||||| ||||| || || | | | Sbjct 7553 AGAGGTCGCGCGCCCGGGCTTCTTCCTTCCCATGGTTCTTCCTTAAG-TCAAGCACCTCG 7611 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||||| | |||||| || || | ||| || || | |||| || || || ||| Sbjct 7612 AAGATATCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGGTCGCTTCCCTCCC 7671 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 |||||||| | || | ||| || | | | || | || ||| || | | || || Sbjct 7672 CCCTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAAGCCATTA 7731 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 | || || || || ||| || ||| || ||||| || | || | Sbjct 7732 CTCGTTCCCTTCGTTCCTTTGATGTACGCTCCGTGCGCGCGAATGTTGTGCACAGACAAG 7791 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || ||| ||| ||| | ||||| |||| || ||||||||||| ||| Sbjct 7792 CCAATCCCACCCGCCGCCTTACTGATGACCGCGCACTGTTTCAAGGTGTCATAGATCCCC 7851 Query 63555 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 | || ||| | |||| |||||| || ||||| |||||| ||| | || || Sbjct 7852 ACAATCGAATCCGCCTTCATAGTTAAG-AGGAAACATGAAGACATCTGGGGGAAACGCGT 7910 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || || | |||||| || || || ||||| ||||||| || | | | | | || Sbjct 7911 CCCGGCGTGAAATAAAGTGGGCGACGCGTGAATAAACCACTTATTACTCATCAATTCATA 7970 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 |||||| | || | |||| || | |||||| || | || || ||||| ||||| Sbjct 7971 CGTCTCGAGCGCCGCCTCTAAGTCATTTCCATGAATCCCCAGCGCCACGCGCATCAACAT 8030 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 | ||| || | || || | ||| || | ||||||| ||| ||| |||| || Sbjct 8031 ATACTGTGGGCGCTCCACCACCTTTTTCCCAAGCTTCAACAGGTAAGATCGCTCCATTGT 8090 Query 63794 TTTAAAACCAAAATAGT 63810 || || |||||||||| Sbjct 8091 CTTGAACCCAAAATAGT 8107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622901639199160