Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2518 84.2 2e-11 >seq2518 Length=13831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | || || || | |||||| |||| | || | Sbjct 5099 AAGATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCC 5158 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || |||||||| ||||| || || || ||||| ||| Sbjct 5159 AGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGAT 5218 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACT 26943 || || | ||||| | || || || ||||| || || | | | |||| |||| Sbjct 5219 CAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCA--GACT 5276 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||||||| || || || ||||| | ||| |||| Sbjct 5277 ATAACATCCAGAAGGAGTCTACCCTGCATTTGGT 5310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478627391828720