Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3524 329 8e-85 seq4035 176 1e-38 >seq3524 Length=35516 Score = 329 bits (364), Expect = 8e-85 Identities = 1164/1801 (65%), Gaps = 72/1801 (4%) Strand=Plus/Minus Query 363377 TCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAAT 363435 |||| ||||| |||||| | |||||| ||||||| |||||||| ||| || | Sbjct 12038 TCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCCTACCTG-CTCAAGATGGAC 11980 Query 363436 GGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGC 363495 || | | || || || ||||| ||| | ||||| || || ||||| |||||| Sbjct 11979 GGCATCGTCATGGAGCGACCCCAGCACATGATCATGCGCGTAGCCATTGGAATCCATAAG 11920 Query 363496 CCGGATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGT-GCTCGTGTATTCA 363550 ||| || || || |||||||| || || || || || || |||| |||| Sbjct 11919 GAGGACGTGGACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTC-----TTCA 11865 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | ||||||||||| ||| | | ||| || || || | || ||| | || || |||| Sbjct 11864 CTCACGCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGCT 11805 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 | ||||| | |||||||| || |||||||| ||||||| |||||| || ||| | |||| Sbjct 11804 TCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAATGTG 11745 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGA 363730 | || |||||| ||||| || |||||||| |||||||| || | || || | Sbjct 11744 CGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAACATCCGGGCGCGTG 11685 Query 363731 ACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGT 363790 || ||||| || ||| || || ||| || || | || |||||||| ||||| | Sbjct 11684 ACTCGTACATCCGTGGCTCAAACGGGACCTCCAACGGCATCGTGCCCATGCTGCGTGTCT 11625 Query 363791 TTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTA 363850 | || | || || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 11624 TCAACGACACGGCCCGCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTTCGCCA 11565 Query 363851 TGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGG 363910 | || || ||||| || |||||||| || ||||| || || || || || ||| | Sbjct 11564 TCTACCTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAACCACG 11505 Query 363911 GAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 | || ||| ||| || || || ||||||| || || ||| |||| | || | Sbjct 11504 GCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTGTTCA 11445 Query 363971 TGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 || ||||||||||| | | ||||| || || ||||| |||| || || || | Sbjct 11444 TGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAACGAGTGCCCTGGCC 11385 Query 364031 TTTCCGATGTATGGGGTGACGA--CTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG 364088 | | || ||||| || || || || | ||| ||| || | ||| || | || Sbjct 11384 TGGCGGACGTATGTGGAGAGGAATTTAAGCAGCTGTAT--GAGACGTACGAGAAGAGTGG 11327 Query 364089 AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGAT 364148 ||||| || ||| || || ||| |||| |||||||| | |||| || ||| | Sbjct 11326 CAAGGCGCGCAAGGTGATCAAGGCCCAGCAGCTGTGGTTTGCGGTGTTGGACTCACAGGT 11267 Query 364149 TGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 ||||| || || ||||||||| | | ||| ||| | ||||| | |||||| |||||||| Sbjct 11266 GGAGACGGGCACGCCCTATATGCTCTTCAAGGATGCCTGCAATCTCAAGTCGAACCAGCA 11207 Query 364209 GCACCTTGG---TA-CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 | | || || || ||| || | |||||| || || ||||| || || || || | Sbjct 11206 GAATCTGGGAGTTATCAAGTCTTC----CAACCTGTGCACGGAGATCATCGAGTATACGG 11151 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----- 364319 | ||||| ||| |||||| || |||||||| || || || ||||||| || Sbjct 11150 CGCCCGATGAGGTTGCCGTCTGCAACCTTGCCTCTGTCAACCTCTCGGCGTTCGTGCGGG 11091 Query 364320 ----AAAAGATGGTA---------------CTTTTGACCACCAGCATCTTTATGACGTAA 364360 | | ||| | ||| ||||| |||| || || || | | Sbjct 11090 AGGAACCAACTGGCAGCGGTAAAGCCCCCTCTTATGACCTACAGCGCCTCTACGAGATCA 11031 Query 364361 CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 || | | || |||| ||| || |||||||||| || | ||| || | | Sbjct 11030 CCAAGGTGGTGACGCGCAACCTCAACCGTGTTATCGACATCAACTTTTACCCCGTGGAAG 10971 Query 364421 AAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTG 364480 | || |||| || || ||||| ||| | || | || | || || |||||| | || | Sbjct 10970 AGGCTAAGCGCTCCAACATGCGGCATAGGCCCGTCGGCATCGGCGTGCAGGGCTTGGCGG 10911 Query 364481 A--CGTT-TTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATA 364537 | |||| | | |||| | | | || || ||| | ||||| | || |||| Sbjct 10910 ATGCGTTCATCAAAATGCGCTA---CCCCTTCGAGTCGGCAGACGCGCTCCAGCTGAATA 10854 Query 364538 AGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAA 364596 |||| |||| || || ||||| || | ||| | || || | || || | |||| Sbjct 10853 AGGACGTCTTCGAGACCATGTACTTCGGCGCCGTCGAAGCCTCCATG-GAAATCGCAATG 10795 Query 364597 ACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTT 364655 | |||| |||| || | | ||| | | | | || |||| |||||||| Sbjct 10794 AAGGAGGGCCCGTACGAGACCT-TCTCCGGTTCGCCCATCAGCAAGGGCGTCTTCCAGTT 10736 Query 364656 TGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGT 364715 || | ||| || || || || || ||| | |||| || || ||| || Sbjct 10735 CGACATGTGGGGCGTGACCCCCTCCACGCGCTGGGATTGGGCCGGCCTGCGCGTCAAAGT 10676 Query 364716 TAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775 || ||||||| ||||| ||||| | |||||||||||||| || || || || Sbjct 10675 CCAGGAGCATGGCGTGCGCAATTCCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGC 10616 Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCG 364835 || ||||| || |||||||||| | | || || || || ||| | ||||| ||||| Sbjct 10615 CCAAATCCTGGGCAACAACGAGTCCGTGGAGCCCTTCACGTCCAACATGTATTCGCGCCG 10556 Query 364836 GGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCG 364895 || || | || |||||| | | || || |||||||| || || || ||| || Sbjct 10555 CGTGCTGGCGGGCGAATTTACCATCGTCAACAAGTACCTGCTCGGCGACCTGATCGAGCG 10496 Query 364896 CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAAT---GGTTCTGTGCA 364952 ||| || ||| || | | ||| | ||||| | |||| || || ||||| Sbjct 10495 CGGCCTTTGGAATGCCGAGGTCCGCAACCAGATCAT---GGGTAATCGCGGCTCGGTGCA 10439 Query 364953 GAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC 365012 |||| | || | | || || || || | || || ||||| ||||| | || Sbjct 10438 GAACGTAGCAAGCATCCCCCGTGAGCTCAAAGAGCTATATAAGACCGTGTGGGAGA--TC 10381 Query 365013 CATGCGAACT--CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 | ||| | |||| || ||||||||||| ||||| || | || || || |||| Sbjct 10380 CGGCAGAAGTGCGTCATCGACATGGCGGCCGACCGCGGGGCCTACATTTGCCAATCCCAG 10321 Query 365071 TCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCT 365128 || | || |||||| || | | || || ||||| |||| || |||||||| || | Sbjct 10320 TCCCTCAA--TATTCACCTGGCCAATCCCACGCCCGCCCAGCTCACCTCCATGCACTTTT 10263 Query 365129 A 365129 | Sbjct 10262 A 10262 >seq4035 Length=10978 Score = 176 bits (194), Expect = 1e-38 Identities = 569/867 (66%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || ||||| ||| ||||||| ||||| || || | || || ||| | || | Sbjct 8048 GTGGAGCGCCCACAGTATATGTTGATGCGCGTGGCGCTGGGGATTCATGGAAATGACTTA 7989 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCC 363563 || || ||| | || || ||| | | | ||| | ||| || | ||||| |||| Sbjct 7988 GAGGCGGCGCTCGAGACGTATGAATTGATGAGTAATAAGTGGTTT-ATTCACGCGTCGCC 7930 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | | || || || ||| || ||||||||||| || || || ||| || Sbjct 7929 CACTTTATTTCACGCCGGGACGCGTTTCCCCCAGATGTCTTCATGTTTCCTCTTAACTAT 7870 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 ||||| ||||| || | ||| |||| |||||| | || | || || | || || Sbjct 7869 GAAGGCGGATTCGATTGTGGGGATCTATGACACCTTGAAACAGTGCGCGGTCATCAGTAA 7810 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA-GAACAGTTACATTC 363742 | || || || ||||| | || | ||||| |||| || || | | || |||| Sbjct 7809 GGCGGCGGGTGGGATTGGCTTGTCTGTGCACAACATTCGCGCGCACGGAGCGT-ACATCA 7751 Query 363743 GCGGCACAGGGGGATACTCG-AATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || |||| || | ||||| |||| |||||||| |||||||||||| ||| Sbjct 7750 AAGGAACGAAGGGA-ACGAGTAATGGCTTGGTGCCCATGCTGCGTGTGTTTGACGTGACT 7692 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || |||| ||||| ||||| ||||| ||||| || || |||||||| || | ||| Sbjct 7691 GCTCGGTATGTCGATCAGGGGGGAGGGAAGCGACCGGGAGCATTTGCTATTTACATTGAG 7632 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 ||| ||||| ||||| || ||| | ||||| | |||| ||| || || || ||| Sbjct 7631 CCTTGGCATGCGGATATCTTCGAGGTGCTTGACTTAAGGAAGAACCATGGGAAGGAAGAA 7572 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 || || || || || || || | |||||| || | || ||||||||| | ||| Sbjct 7571 GCCCGGGCGCGCGACCTCTTTTACGGGCTTTGGATTCCCGATTTGTTTATGAAGAGAGTG 7512 Query 363982 GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGT 364040 |||| || | || ||||||||| | || || | | ||||| || | ||| ||| Sbjct 7511 GAGGAAGATGGGATTTGGTCACTGATGTGTCCTGATCAGTGTCCTGGCTTGGGCGACTGT 7452 Query 364041 -ATGGGGTGACGACTAT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 || || | || | | | | || ||| | || || ||| | || || | Sbjct 7451 CAT--GGCAAAGAGTTTGAGGTCCTGTATCTGCAA--TACGAAAAAGCTGGGAAAGTAAA 7396 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 |||||| | | || || | || ||||| |||||| |||| || ||||| || || || Sbjct 7395 AAAGACAGTGCGTGCGCAAGACCTGTGGTTCGCCATCCTGGACTCACAGATCGAAACGGG 7336 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || || |||||| | | |||||| |||| || | ||| ||| ||||| | | || Sbjct 7335 CACGCCTTATATGCTCTTCAAAGACGCGTGTAATCTTAAGAGCAATCAGCAAAATTTAGG 7276 Query 364218 TACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 || |||| | || | ||| | || || |||||||| | || || ||||| ||| Sbjct 7275 GACGATTC-GAAGCTCGAACTTGTGCACGGAGATTATCCAGTATACGAGCCCCGAGGAGG 7217 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCG 364303 || || |||||| | || ||||||| Sbjct 7216 TGGCTGTGTGTAACTTGGCCTCGATCG 7190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303255892875482