Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq159 113 4e-20 seq35 113 4e-20 >seq159 Length=12779 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| |||| ||||||||||| || ||||||||||| | Sbjct 10475 CCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAA 10534 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || ||||||||| | || || ||||| || || || Sbjct 10535 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGG 10594 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | |||||||| | | | ||||||| |||||| Sbjct 10595 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACA 10654 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || ||||| || |||||||| Sbjct 10655 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 10701 >seq35 Length=30318 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| ||||||| Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12598 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 12599 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| Sbjct 10820 TAACCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCA 10879 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | | || | | ||||||| || || ||||| | || || ||||| ||||| Sbjct 10880 GAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGG 10939 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 10940 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCT 10999 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 11000 ACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11230 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 11231 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11458 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 11459 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11686 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 11687 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11914 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 11915 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12142 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 12143 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| |||||| Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12370 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||| || || ||||| Sbjct 12371 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || ||||||||||| | Sbjct 12647 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12706 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || ||||| | || || ||||| ||||| || Sbjct 12707 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12766 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||||||||| | | | ||||||| ||||||| Sbjct 12767 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12826 Query 16889 TCCACGGTGATGGTTTTTCC 16908 |||| |||||||| || || Sbjct 12827 TCCAGCGTGATGGTCTTGCC 12846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405059113554490