Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4160 122 6e-23
seq2518 118 7e-22
seq159 114 9e-21
seq35 93.3 3e-14
seq4787 84.2 1e-11
>seq4160
Length=3530
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||| |||||||||| | |||||||| || |||||| |
Sbjct 2491 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCAT 2432
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2431 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2397
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 461 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 402
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||||||
Sbjct 401 ACCGATATTTAGCCTTA 385
>seq2518
Length=13831
Score = 118 bits (130), Expect = 7e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||||||||||||||| || || |||||| || || || || || |||
Sbjct 5328 CCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGAC 5269
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || | ||| || || || || || ||||| || ||||| | |||
Sbjct 5268 AGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 5209
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || ||||||||||| |||| || || || | || ||
Sbjct 5208 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACA 5149
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || |||||||||| ||| || ||||| || ||||| ||
Sbjct 5148 TCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTT 5099
>seq159
Length=12779
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| |||| || |||| |||| || | ||| |||||| ||||| ||||| || ||
Sbjct 10475 CCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAA 10534
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || |||| || | || || || ||||| || ||||| || ||||| | ||||
Sbjct 10535 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGG 10594
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| || |||||||||||||||| || || || | |||||
Sbjct 10595 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACA 10654
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| || || || || ||||||| ||| || ||||| |||||||||
Sbjct 10655 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702
>seq35
Length=30318
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || | || |||| |||||| || || || |||||| || || ||||| |||||
Sbjct 10822 ACCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGA 10881
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || | || || | || || || || || || ||||| || || |||| |||
Sbjct 10882 AAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 10941
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||| || |||||| || || |||||||| |||| || || || | || ||
Sbjct 10942 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11001
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || ||||||||||| || ||||| || ||||||
Sbjct 11002 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11050
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 11063 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11122
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 11123 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11182
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 11183 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11242
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 11243 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11278
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 11291 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11350
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 11351 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11410
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 11411 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11470
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 11471 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11506
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 11519 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11578
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 11579 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11638
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 11639 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11698
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 11699 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11734
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 11747 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11806
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 11807 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11866
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 11867 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11926
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 11927 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11962
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 11975 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12034
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 12035 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12094
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 12095 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 12154
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 12155 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12190
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 12203 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12262
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 12263 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12322
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 12323 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 12382
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 12383 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12418
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| |||||| || || || |||||| || || ||||| ||||| | || |
Sbjct 12431 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12490
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || |||| ||||| ||| || |||
Sbjct 12491 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12550
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || |||||||| |||| || || || | || || || | || ||
Sbjct 12551 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATG 12610
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||||||||| || ||||| || ||||||
Sbjct 12611 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12646
>seq4787
Length=11161
Score = 84.2 bits (92), Expect = 1e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || || || || |||||||| || || || || || || | ||||| || || |||
Sbjct 6622 TCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTG 6563
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||| ||||||||||| |||| || || || | || || || | |||||
Sbjct 6562 TCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAATG 6503
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| || ||||||| ||| || ||||| || |||||| ||
Sbjct 6502 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATGCTT 6464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923315229181
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