Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq778 86.0 8e-12 seq5302 82.4 9e-11 >seq778 Length=86563 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 50780 ATGTGGTACTCGGACCTGCTCAAGCCCTGGGTCCACTACGTGCCCGTCCGCCCCGACCTG 50839 |||||||||| ||| |||| ||||| || || ||||||||||| ||||| || Sbjct 15102 ATGTGGTACTTCCCCCTCCTCAGGCCCTTTGTTGACCACGTGCCCGTCAAGGCCGACATG 15043 Query 50840 TCGGACCTGTTTGACCGCATCGAGTGGTGCCGCGCCAACGACGCCCAGTGCCGGGCAATG 50899 ||||||||| || | ||| |||||||||||| |||||||| |||||| || || Sbjct 15042 TCGGACCTGGACGAGCAGATCCAGTGGTGCCGCGAGCACGACGCCAAGTGCCAGGTGATT 14983 Query 50900 GCTGAAAACGCC 50911 || | |||||| Sbjct 14982 GCAGCCAACGCC 14971 >seq5302 Length=7470 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 15056 ATTGGCGACAAGTTTTGCTCT-GGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCC 15114 || ||||||||||||| ||| || | || ||| ||||| | ||| | | || Sbjct 609 ATAGGCGACAAGTTTTCCTCGCGGCACGG-GCAGAAGGGTGTCCTCTCCATTCTCTGGCC 551 Query 15115 CCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAA 15174 ||||| || ||||| ||||||| ||| |||||| | |||||| | |||||||| ||| | Sbjct 550 GCAGGAGGATATGCCGTTTACCGAGTCGGGCATGTCCCCCGACGTGATCATCAATCCCCA 491 Query 15175 CTGCATCCCGTCCCGCATGACCAT 15198 | |||| |||||||||||||| Sbjct 490 TGCCTTCCCCTCCCGCATGACCAT 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611347284317600