Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4035 147 3e-30 >seq4035 Length=10978 Score = 147 bits (162), Expect = 3e-30 Identities = 589/917 (64%), Gaps = 8/917 (1%) Strand=Plus/Plus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || |||| ||||| || || ||||| | | || ||| || || ||||| ||||| Sbjct 7195 GAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTCGTATACTGGATAATCTCCGTGCAC 7254 Query 62813 AGATTACTACACTTGA-TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 | || | | | || | || ||||||||||| ||||| ||||| |||||||| || Sbjct 7255 AAGTT-CGAGCTTCGAATCGTCCCTAAATTTTGCTGATTGCTCTTAAGATTACACGCGTC 7313 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 || | || || | || || || ||||| ||||| || || | || || ||| | Sbjct 7314 TTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTGTGAGTCCAGGATGGCGAACCACAG 7373 Query 62932 GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 62991 | || | || | | | ||| | || || |||||||| | ||||| Sbjct 7374 GTCTTGCGCACGCACTGTCTTTTTTACTTTCCCAGCTTTTTCGTATTGCAGATACAGGAC 7433 Query 62992 TTCGAACTCGTCTCCCCAAACATT-GTCCAGTCCAGGACATTCATCCGGACACATCAACG 63050 || ||||| | | || ||| | | ||| |||||||| | ||| |||||||||| | Sbjct 7434 CTCAAACTCTT-TGCCATGACAGTCGCCCAAGCCAGGACACTGATCAGGACACATCAGTG 7492 Query 63051 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63110 |||| || || |||| ||||| |||||||| | ||| ||||||||||| | || Sbjct 7493 ACCAAATCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATCCAAAGCCCGTAAA 7552 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCC 63169 | || || | | | ||| || || || ||||| ||||| || || | | | Sbjct 7553 AGAGGTCGCGCGCCCGGGCTTCTTCCTTCCCATGGTTCTTCCTTAAG-TCAAGCACCTCG 7611 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | ||||| | |||||| || || | ||| || || | |||| || || || ||| Sbjct 7612 AAGATATCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGGTCGCTTCCCTCCC 7671 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 |||||||| | || | ||| || | | | || | || ||| || | | ||||| Sbjct 7672 CCCTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAAGCCATTA 7731 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63349 || || || || ||| ||| || ||| || ||||| || | || | Sbjct 7732 CTCGTTCCCTTCGTTCCTTTGATGTACGCTCCGTGCGCGCGAATGTTGTGCACAGACAAG 7791 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || ||| ||| ||| | ||||| |||| || || |||||||| ||| Sbjct 7792 CCAATCCCACCCGCCGCCTTACTGATGACCGCGCACTGTTTCAAGGTGTCATAGATCCCC 7851 Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 | || ||| || |||| |||||| || ||||| |||||| ||| | || || Sbjct 7852 ACAATCGAATCCGCCTTCATAGTTAAG-AGGAAACATGAAGACATCTGGGGGAAACGCGT 7910 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || || | |||||| || || || |||||| ||||||| || | | | | | || Sbjct 7911 CCCGGCGTGAAATAAAGTGGGCGACGCGTGAATAAACCACTTATTACTCATCAATTCATA 7970 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 |||||| | || | |||| || | |||||| || | || || ||||| ||||| Sbjct 7971 CGTCTCGAGCGCCGCCTCTAAGTCATTTCCATGAATCCCCAGCGCCACGCGCATCAACAT 8030 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 | ||| || | || || | ||| || | ||||||| ||| ||| |||| || Sbjct 8031 ATACTGTGGGCGCTCCACCACCTTTTTCCCAAGCTTCAACAGGTAAGATCGCTCCATTGT 8090 Query 63649 TTTAAAACCAAAATAGT 63665 || || |||||||||| Sbjct 8091 CTTGAACCCAAAATAGT 8107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633585657739600