Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4787 95.1 1e-14 seq5413 86.0 5e-12 >seq4787 Length=11161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || |||| || |||| || ||| | Sbjct 6468 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTACCCTCGATGTCGAGCCCAGC 6527 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||||||||| || ||||| || || || || |||||||| Sbjct 6528 GACACAATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 6587 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||| |||| ||||||||||| || || || |||| Sbjct 6588 CAGCGACTTATCTTTGCCGGCAAGCAGTTGGAGGATG 6624 >seq5413 Length=43850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/110 (78%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 51177 CGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 ||||||||||| ||||| ||||||||||||||||| | | | |||||||| || ||||| Sbjct 43002 CGTCCATTCCAAGATTTTTTTGGCCCAGTACATGCGAAGGAATCCGTGCATTTTCCCCTC 42943 Query 51237 --GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTG 51284 ||| |||||| ||||| | |||||| | | |||||||||||| Sbjct 42942 TTGCAC--AAGCTGGAGTTGAGAGGCGTTCCAGAGCTGGTCGTGAGTTTG 42895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297099786565