Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5733 690 0.0 seq225 612 2e-170 >seq5733 Length=57551 Score = 690 bits (764), Expect = 0.0 Identities = 727/954 (76%), Gaps = 6/954 (1%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | |||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 166141 ATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAG 166200 | ||| |||||| |||||||| | || |||||||| || ||||||||||| |||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 166201 CCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCC 166260 || || || || || || | || || |||||||| ||| | ||||| ||| | || Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 166261 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGG 166320 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 166321 CTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCC 166380 ||||| ||||||||||||| ||| || ||||| || |||||| | | || | | | Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 41530 Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 |||||||| |||||||||||| | ||||| | || |||||||||||||||| |||| Sbjct 41529 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 41470 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 || | ||| || || || || |||||||| ||||| ||| | || || || | || ||| Sbjct 41469 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAA 41410 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 ||| |||||||| | ||||| | ||||| ||| || ||||||| |||| | || Sbjct 41409 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 41350 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||||||||| |||||||| || |||||||| ||||||||| ||||| || ||||| Sbjct 41349 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 41290 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGT 166680 || ||||| || | ||| || |||||||| ||| || || || | ||||| Sbjct 41289 TTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 41230 Query 166681 GAGACCACTGAA-ACTGAG--TCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 166737 || |||||| || | | ||| ||||| |||||||| || || ||||||||||| Sbjct 41229 GA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 41173 Query 166738 ACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 166797 || ||||||||||| ||||| || |||||||| || || | |||||||||||||| Sbjct 41172 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 41113 Query 166798 TTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 166857 ||||||||||| || | | ||||||||| | || |||||||| ||||| ||||||||| Sbjct 41112 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGG 41053 Query 166858 TTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 166917 || ||||||||||||||||| || |||||||| ||| | |||||||||||||||||||| Sbjct 41052 TTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAA 40993 Query 166918 TCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCT 166977 || | | ||| |||| ||||||||| ||||||||||||| || | ||||||||||| Sbjct 40992 TCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 40933 Query 166978 GGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 167031 | | | |||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 40932 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 612 bits (678), Expect = 2e-170 Identities = 748/1015 (74%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 ||||||||| | ||||| || || || || ||| | || ||||| || | || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 167372 CCCA-CTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTG 167430 |||| | || | ||| ||| ||||||| ||| | || || ||||| |||||||| || Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 167431 GTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGT 167490 |||||| || || || || ||| ||| | || || ||| || | || | |||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 167491 GTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 167550 ||||| || || || ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 167551 GGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 167610 || ||||||| | ||| || |||| ||| | ||||||||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 167611 AGCCTTTGCTCTCATAGGATTTATGCTT-CGGCAATTTGAGATAAGTAGACTAGTAGGTA 167669 || |||| | | || ||||| || || || ||||| ||||| | | || ||||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 167670 TCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTC 167729 | ||||| ||||| || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 167730 TCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789 | || |||||||| ||||| | ||||||||||| || || ||||| |||||||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 167790 TATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATA 167849 | || |||| || ||||| |||| ||||||||||||||||| || || || ||||||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 167850 TGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAG 167909 ||||||| || || || || |||| |||||||| | |||||||| ||||| | |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 167910 TAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGA 167969 |||| ||||| || | |||||||||||| |||||||| ||| || ||| | | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 167970 CTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTG 168029 | || ||| ||||||||||| ||||| || || || ||||||||||||||||||||| Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 168030 GTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGG 168089 || | |||||| || || |||||| | || ||||| ||| | || |||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 168090 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACT 168149 | | |||||||||||| ||||||| | ||| | ||| | ||| | | || || || | Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 168150 TTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAA 168209 | || ||||| || || | || || || |||||||| |||||||||||||| || |||| Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 168210 ACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAA 168269 | ||| | | |||||||| | | | ||||||||| || ||||||||||||||||| Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 168270 ACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATATAATAA 168324 | |||||||||||||| || || || ||| | || ||||| || | ||| | ||| Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAGTAA 38847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567190514069600