Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2518 84.2 2e-11 >seq2518 Length=13831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || |||||||| || ||||| || |||| || || || || ||| | || ||| ||| Sbjct 5099 AAGATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCC 5158 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| | | | | || || ||||| || ||||| || ||| | || ||| Sbjct 5159 AGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGAT 5218 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || | || || | ||||| || ||| |||| || || || | || ||| Sbjct 5219 CAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTAT 5278 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || || || || ||||| || ||||| |||||||||||||| |||||| Sbjct 5279 AACATCCAGAAGGAGTCTACCCTGCATTTGGTGTTGCGTCTGCGTGGTGGC 5329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423009833414200