Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq35 107 2e-18 seq2518 104 2e-17 seq159 104 2e-17 seq4787 93.3 4e-14 seq3524 86.0 5e-12 >seq35 Length=30318 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 11049 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 10990 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 10989 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 10930 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 10929 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 10870 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || || || || || || | || || || |||| |||||||||||| Sbjct 10869 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGTT 10821 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || ||||| ||| | Sbjct 12645 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCCAGC 12586 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 12585 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12526 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 12525 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12466 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 12465 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12419 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 11277 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11218 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 11217 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11158 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 11157 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11098 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 11097 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11051 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 11505 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11446 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 11445 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11386 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 11385 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11326 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 11325 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11279 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 11733 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11674 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 11673 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11614 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 11613 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11554 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 11553 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11507 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 11961 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11902 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 11901 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11842 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 11841 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11782 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 11781 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11735 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 12189 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12130 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 12129 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12070 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 12069 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12010 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 12009 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11963 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || || ||| | Sbjct 12417 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12358 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || ||||| || Sbjct 12357 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12298 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | || || |||||| Sbjct 12297 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12238 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| |||||||||| Sbjct 12237 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || ||||| ||| ||| || | || | | || || || || || |||| Sbjct 12836 TCACGCTGGACGTGGAGCCCAGCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACA 12777 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 ||||||| || || ||||| || || || || || || || || || ||| | |||||| Sbjct 12776 AGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATG 12717 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 |||||| | || || |||||||| || || || || || | || || || |||| Sbjct 12716 GCCGCACGCTTTCTGACTACAACATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCC 12657 Query 22436 TGCGCGGAGG 22445 |||||||||| Sbjct 12656 TGCGCGGAGG 12647 >seq2518 Length=13831 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || || || | || ||||| || |||| || || ||||| || Sbjct 5099 AAGATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCC 5158 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || | | || ||||| || || ||||||||||| || || || ||| Sbjct 5159 AGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGAT 5218 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || || || || | ||||| || || | || || || Sbjct 5219 CAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTAT 5278 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | ||||| || ||||| |||| || || Sbjct 5279 AACATCCAGAAGGAGTCTACCCTGCATTTGGTGTTGCGTCTGCGTGGTGG 5328 >seq159 Length=12779 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| | Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| || || |||||||| || || || || ||||| Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| |||||| | || || |||||| Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 10522 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | || | ||| |||| |||| || || Sbjct 10521 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGG 10475 >seq4787 Length=11161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || || || || ||| | Sbjct 6468 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTACCCTCGATGTCGAGCCCAGC 6527 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| ||||| |||||||||||||| || || || || Sbjct 6528 GACACAATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 6587 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 || || ||||| ||||||||||| ||||| |||||| ||| || Sbjct 6588 CAGCGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGTAC 6631 >seq3524 Length=35516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 199/297 (67%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| || ||||| ||| | || ||||||||||| || || | || || || | | ||| Sbjct 11518 CAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCC 11577 Query 130161 CTTCCGTTTGCCC---CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||| || |||||| || ||||| |||| ||| | | | |||| |||| |||| ||| Sbjct 11578 CTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCAT 11637 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 | | | | ||||||| || ||||||| || ||| | | |||| ||||| | Sbjct 11638 GGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGAT 11697 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-A 130336 |||||| | | ||| || || || | || || || || ||| | || || | | Sbjct 11698 GTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCAC-ATTGCTTGA 11756 Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGG 130393 | || ||||| || || |||| ||| || || ||| | || ||||| || |||| Sbjct 11757 GAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGG 11813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698069589815