Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3524 111 3e-19 seq4766 86.0 1e-11 >seq3524 Length=35516 Score = 111 bits (122), Expect = 3e-19 Identities = 202/295 (68%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 294128 ATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACT 294187 |||||| ||| |||| || | ||||||||||||||||| ||| | |||||||| | Sbjct 11361 ATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGT 11420 Query 294188 GGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGT 294247 | | || |||||||||||| |||||| |||||| ||| | ||||| ||||||| Sbjct 11421 CGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGT 11480 Query 294248 TGCGGGCGCGCAGGCTCTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGT 294307 |||||| ||| ||| | || || || || || |||||| || | ||| | Sbjct 11481 CGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAAGATAT 11540 Query 294308 CGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGGT 294364 ||| || ||| ||||| || | || || || ||||| | ||| || ||||||| Sbjct 11541 CGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGT 11600 Query 294365 TGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGA 294419 ||||| | ||| || || || |||||| ||||||||||| | ||| Sbjct 11601 CCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTGGA 11655 >seq4766 Length=31996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG--- 280229 || ||||| ||||| |||||||||||||| || ||||| | | | ||||||| Sbjct 2578 GTGATTGGCCCCAACGGTGCGGGTAAGTCCACGGCGATCAAGCTGTTAATTGGCGAGCTC 2519 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGG-AAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||| | | ||| | || ||| ||||| ||||||||||| |||| ||||| || Sbjct 2518 ACCCCGTCGGCTGGCG----CGATTGTCAAGCACCCCAACATGCGCCTGGCCTACGTGGC 2463 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| || ||| | ||||| ||| || || ||| || ||| ||||| Sbjct 2462 ACAGCACGCGTTTTTTCACTTGGAGAAGCACTTGAACGAGACGCCGGCCCAGTACATCAT 2403 Query 280349 GTGGCGCTATGCA 280361 |||||||| |||| Sbjct 2402 GTGGCGCTTTGCA 2390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027759747250691