Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3524 416 5e-111 seq2878 116 7e-21 seq3272 86.0 1e-11 >seq3524 Length=35516 Score = 416 bits (460), Expect = 5e-111 Identities = 1218/1850 (66%), Gaps = 61/1850 (3%) Strand=Plus/Plus Query 243769 GGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGC 243828 ||| | ||||||||||||||||||||||||||| | ||||| | | |||||||| Sbjct 10216 GGTGCGCAGGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGAATAAAAGTGCATGGA 10275 Query 243829 CGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTG 243888 || |||| | || | || | | || | | | ||||||||||| Sbjct 10276 GGTGAGCTGGGC------GGGCGTGGGATTGGCCAGGTGAATA------TTGAGGGACTG 10323 Query 243889 GCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATAT 243948 | ||| | | ||| | | || || || |||||| ||||| | |||||| || Sbjct 10324 GGATTGGCAAATGTAGGCCCCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGAT 10383 Query 243949 CTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT-CGATGTTCTGCA 244007 ||| || | ||||| || | ||||| | | ||||| | ||| | | |||||||| Sbjct 10384 CTCCCACACGGTCTTATATAGCTCTTTGAGCT-CACGGGGGATGCTTGCTACGTTCTGCA 10442 Query 244008 CCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCT 244067 ||||||| | | |||| |||| |||| | | | ||||| ||||| ||||| Sbjct 10443 CCGAGCCGCGATTACCCATGATCTGGTTGCGGACCTCGGCATTCCAAAGGCC---GCGCT 10499 Query 244068 C---CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGC 244124 | ||| | ||| ||||| | |||| || | ||| || |||| ||||||||||| Sbjct 10500 CGATCAGGTCGCCGAGCAGGTACTTGTTGACGATGGTAAATTCGCCCGCCAGCACGCGGC 10559 Query 244125 GCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCG 244184 || || | |||| ||| ||||| | | ||| |||||||||| || || |||| Sbjct 10560 GCGAATACATGTTGGACGTGAAGGGCTCCACGGACTCGTTGTTGCCCAGGATTTGGGCCG 10619 Query 244185 TGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGC 244244 || || || |||||||||| || |||||| || | |||||| ||| ||||| Sbjct 10620 TGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGGAATTGCGCACGCCATGCTCCTGGACTT 10679 Query 244245 GGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAG-AGGTCCTCGCGTTTGAGGCCCCAC 244303 || | || || ||| ||||| || || | ||| || || |||||| Sbjct 10680 TGACGCGCAGGCCGGCCCAATCCCA---GCGCGTGGAGGGGGTCACG-------CCCCAC 10729 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| ||||| | | |||||||||| ||| || | ||||| ||| || || Sbjct 10730 ATGTCGAACTGGAAGACGCCCTTGCTGATGGGCGAACCGGAGAAGGTCTCGTACGGGCCC 10789 Query 244364 TCGCGCTGGGCCAGCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || | || | || || | | |||| |||| || |||| ||||||||||||| Sbjct 10790 TCCTTCATTGCGAT-TTCCATGGAGGCTTCGACGGCGCCGAAGTACATGGTCTCGAAGAC 10848 Query 244423 CATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 ||| |||| | | | || | ||||| | ||||||| || ||| | ||||| Sbjct 10849 GTCCTTATTCAGCTGGAGCGCGTCTGCCG-ACTCGAAGGGGTAGCGCATTTTGATGAACG 10907 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| ||||||||||||||||||| ||| || || ||| ||||||||||| | | Sbjct 10908 CATCCGCCAAGCCCTGCACGCCGATGCCGACGGGCCTATGCCGCATGTTGGAGCGCTTAG 10967 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGC 244601 | || |||||||||||||||| |||||| || |||||||||||| || | || Sbjct 10968 CCTCTTCCACGGGGTAAAAGTTGATGTCGATAACACGGTTGAGGTTGCGCGTCACCACCT 11027 Query 244602 GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGAT--CCTCGGCGA--TGGTG 244657 | || ||| || |||| | ||| || | || | || | || | |||| Sbjct 11028 TGGTGATCTCGTAGAGGCGCTGTAGGTCATAAGAGGGGGCTTTACCGCTGCCAGTTGGT- 11086 Query 244658 ATCCTC----ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 ||||| || ||| | |||| ||| ||| |||||||||||||| ||||| || Sbjct 11087 -TCCTCCCGCACGAACGCCGAGAGGTTGACAGAGGCAAGGTTGCAGACGGCAACCTCATC 11145 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 | || |||| || ||||| ||||| ||||| ||||||| ||||| | Sbjct 11146 GGGCGCCGTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATT 11205 Query 244774 CTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| || || |||||| |||||||| |||||| ||||||| ||||| || ||||| Sbjct 11206 CTGCTGGTTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTC 11265 Query 244834 GAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTT 244893 | ||| | | | | || ||| || | | ||||||| | | |||| ||||| Sbjct 11266 CACCTGTGAGTCCAACACCGCAAACCACAGCTGCTGGGCCTTGATCACCTTGCGCGCCTT 11325 Query 244894 GCC-CTCTGCCTCGTAGCGGGTG-TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT 244951 ||| |||| | ||||| || | ||||| || || || || || || || | Sbjct 11326 GCCACTCTTC-TCGTA-CGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCC 11383 Query 244952 AGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGC 245011 ||||| |||||| ||||| | ||| ||| |||||| ||| || || | |||| Sbjct 11384 AGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGC 11443 Query 245012 ATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAG 245071 ||||| || || || |||||||||| | ||| | ||| | || || || | || | Sbjct 11444 ATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATTG 11503 Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 || |||||| | ||| |||| || || |||| ||| ||||||||||||||| |||| Sbjct 11504 CCGTGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAG 11563 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTT 245190 | |||| | ||| |||||| || ||||||||||| | | || | |||| Sbjct 11564 ATGGCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTG-TCGTT 11622 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||||| ||||| | ||||| |||||||| ||| ||||| | ||| |||||| | Sbjct 11623 GAAGACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGA 11682 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 | | ||| || ||| ||| || | || | || || ||| |||||||||| Sbjct 11683 GTCACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGC 11742 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || || ||||| ||||| || || || ||| |||| ||||||| | || || Sbjct 11743 CGCACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAG 11802 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 ||||||||||| ||||| ||| || ||| | |||||| || || || ||||||| Sbjct 11803 GAAGCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTG 11862 Query 245431 GGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGC 245489 || ||| ||| || || | || ||| |||| | | ||||| | || || Sbjct 11863 AGTGAAG-AGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCT 11921 Query 245490 CGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATG--GGTCCCTC 245547 ||||| | ||| | ||||| |||||||||| ||| ||| | | || Sbjct 11922 TATGGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCC-- 11979 Query 245548 GGGTCC--CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 |||| |||||||| |||||| ||| ||||||||||| || || || Sbjct 11980 --GTCCATCTTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATA 12027 >seq2878 Length=6153 Score = 116 bits (128), Expect = 7e-21 Identities = 202/292 (69%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| ||||||||||||||||||||||||||||| |||||| | ||| ||||| ||| Sbjct 5836 GAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCATCGAGAACATCCACAGCGAGGTATAC 5895 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA--ACGGGCTGTTCAAGG 42618 || || || ||||||||||| | | | ||| || | | || ||| |||| | Sbjct 5896 TCCCTCCTCATCGACACGTACATCAAGAA--CGGTCAAGAGAAGCACAAGCTCCTCAATG 5953 Query 42619 CCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGA 42678 |||| || || |||| || || ||||||| | ||||| |||| ||| ||| Sbjct 5954 CCATTGATACTGTGCCTTGTGTCCGTCGGAAGGCGCAGTGGGCCCTCAGGTGGTGCGACC 6013 Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738 | |||| | |||| |||| | ||| | || ||| | || || || || || || | Sbjct 6014 GGAAGTACGCCTCTTTCGCCGAGCGCCTGATTGCGTTTGCGGCTGTGGAAGGTATATTTT 6073 Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCC 42790 || || | ||| ||| || |||||||| ||| ||| || | |||||| Sbjct 6074 TCAGTGGGTCGTTCTGCTCGATATTCTGGCTGAAGAAGAGGGGTTTGATGCC 6125 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/183 (70%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42290 GCACCAGGACA--TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAG 42347 |||||| ||| ||||| |||||||||| | || || ||| |||||| || ||| Sbjct 5480 GCACCACCACAGATCTGGGACATGTACAAGCAAGCTGAGGCCTCTTTCTGGACGGCGGAG 5539 Query 42348 GAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTT 42407 ||| | ||||||||| | |||| | | | ||||||| || || || || || | Sbjct 5540 GAGCTGGACCTGGCCCACGACAAGACTGACTGGGAGAAGCTTTCCGACAAGGAGCGTCAT 5599 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| || || | || |||||||||||||| || || || || || || || |||||| Sbjct 5600 TTCGTCTCGCACGTCCTCGCCTTCTTCGCCGCGTCCGATGGGATCGTTAACGAAAACCTG 5659 Query 42468 GCC 42470 ||| Sbjct 5660 GCC 5662 >seq3272 Length=24018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 243/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 242850 ATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGCATG-CTGGTCAA 242908 ||| | ||||||||||| || |||| || || | ||||| ||||| | || ||||| Sbjct 16303 ATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACCACGCAA-GTCGCCCGGCTTGTCAA 16245 Query 242909 GGCCCTGCTGGAGATGGGAGTCGAGGCCGA-GCTGATGAGGTTCCCGGACAGGACCACTC 242967 | | ||| | || || | | ||| || ||| || | || || ||| | || ||| Sbjct 16244 GTCGTTGCGCGCGAATGGGTTGGCGGCGGAAGCT-ATCCGATTTCCAGACCGCACTACTA 16186 Query 242968 CGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGACGATCACGTCG 243027 | ||||| ||||||||| ||||||| ||| | ||| | ||||| |||| Sbjct 16185 CCATCGGCACGATGATCAATGCGTACCTTGCCAAGGCAACGGATTTAGACGACCACGCTA 16126 Query 243028 TACACCTCCTGTTCTCGGCCAACCGATGGGAAGCCGCCTCCGACCTGA-AGCGCAAGCTG 243086 | || || ||||||||||| || || |||| || || || | | | | |||||||| Sbjct 16125 TCCATCTTCTGTTCTCGGCTAATCGCTGGG-AGGCGGTGGCGTCTTTACATAGCAAGCTG 16067 Query 243087 ATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGTTCTCCGGCGTAGCCTTCACGGCG 243146 | || || || | ||| || |||||||||| ||| || |||||| ||||| Sbjct 16066 GCGGCAGGGACGACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGGCCTTCTCGGCG 16007 Query 243147 GCGAAGCCCGGGTTCGAGCTCGAGTGGTGTAAGCGAACCGA-CGTGGGTCTGCCCAAGCC 243205 || || | ||| | || | || ||||| |||| | ||| || |||| |||| || || Sbjct 16006 GCCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGCGACCGCGGGT-TGCCGAAACC 15948 Query 243206 CGA 243208 || Sbjct 15947 GGA 15945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944270133391760