Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3272 127 2e-24 >seq3272 Length=24018 Score = 127 bits (140), Expect = 2e-24 Identities = 210/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 20282 GCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAA 20341 ||||| ||||| || || ||||||||||| || | | || |||| ||| ||||| Sbjct 18743 GCAATATTAAACGGCACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGAC 18684 Query 20342 AGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAAC 20401 ||||| || | || |||||||| ||||| |||| |||||| || || | ||||||| | Sbjct 18683 AGCTCCCCATTTGCCACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTC 18624 Query 20402 GACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTT 20461 || |||| || ||||| || | | |||||| | || ||| | |||||| || ||| Sbjct 18623 CCCAGATCCGAAGGATTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTT 18564 Query 20462 ATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCG 20521 || || | | | || || || | |||| || || ||||| || | | Sbjct 18563 ATCGTCTCAATTGCATTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATA 18504 Query 20522 TCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCC 20581 ||| ||| | |||||||| |||| ||||||||| ||||| || ||||| | || ||| Sbjct 18503 TCCTTGTATTCAGCCCCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCC 18444 Query 20582 TCC 20584 ||| Sbjct 18443 TCC 18441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441340519096840