Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2518 127 5e-24 seq159 118 3e-21 seq35 114 3e-20 seq4787 95.1 3e-14 >seq2518 Length=13831 Score = 127 bits (140), Expect = 5e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| | ||||| || ||||| || | ||| || || |||||| Sbjct 5292 TCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAG 5233 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || ||||| ||| ||||| || || || |||||||| ||| |||| |||||| Sbjct 5232 ATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTT-CACGTT 5174 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 5173 CTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGAC 5114 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 5113 GAAGATTTGCAT 5102 >seq159 Length=12779 Score = 118 bits (130), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | |||||||| ||||| || | || || || || ||| Sbjct 10511 TCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAG 10570 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || ||||| ||| | ||||| ||||| || |||||||| ||| |||| ||| || Sbjct 10571 ATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTT-CACATT 10629 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | || || || || ||||| ||||| || ||||| |||||||| Sbjct 10630 CTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 10689 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 10690 GAAGATCTGCAT 10701 >seq35 Length=30318 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 10859 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 10918 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 10919 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 10978 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 10979 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 11038 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11039 AAGATTTGCAT 11049 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 11087 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 11146 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 11147 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 11206 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 11207 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 11266 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11267 AAGATTTGCAT 11277 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 11315 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 11374 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 11375 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 11434 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 11435 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 11494 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11495 AAGATTTGCAT 11505 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 11543 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 11602 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 11603 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 11662 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 11663 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 11722 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11723 AAGATTTGCAT 11733 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 11771 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 11830 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 11831 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 11890 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 11891 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 11950 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11951 AAGATTTGCAT 11961 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 11999 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 12058 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 12059 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 12118 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 12119 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 12178 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12179 AAGATTTGCAT 12189 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 12227 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 12286 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 12287 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 12346 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 12347 TCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 12406 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12407 AAGATTTGCAT 12417 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||||| || || || | || || || |||||| Sbjct 12455 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 12514 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| ||| |||||||| Sbjct 12515 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 12574 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || |||||||| ||||| || |||| ||||||||| Sbjct 12575 TCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACG 12634 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12635 AAGATTTGCAT 12645 >seq4787 Length=11161 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||| || || || || || || || || || ||||| || ||||| || | || Sbjct 6635 GAGCGTACGGCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGG 6576 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| || || || ||||| || ||| |||| |||||| || || | ||||| | || | Sbjct 6575 GATACCCTCCTTGTCCTGAATCTTTTGCTT-CACGTTCTCGATTGTGTCGCTGGGCTCGA 6517 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || ||||| || ||||| ||||||||||| || ||||| Sbjct 6516 CATCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 6468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179565966101978