Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3524 194 2e-44 seq1952 150 2e-31 seq2878 87.8 2e-12 >seq3524 Length=35516 Score = 194 bits (214), Expect = 2e-44 Identities = 590/899 (66%), Gaps = 21/899 (2%) Strand=Plus/Plus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 || ||||| || || ||||| |||| || ||| ||| || |||| |||| || Sbjct 11153 GTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGG 11212 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| || || ||||||||| | ||||| || ||||| ||||||||| || Sbjct 11213 TTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGT 11272 Query 114632 GACTTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCT 114689 || | | | || ||| | | | | | || | || | ||| | || ||| || Sbjct 11273 GAGTCCAACACCGCAAACCACAGCTGCTGGGCCTTGATCACCTTGCGC-GCCTTGCCACT 11331 Query 114690 CCTCCTCGTACTTTGTGTAGAGG-GCTTCAAA--CTCTTCACCCACGGCCTCTGAGAGCC 114746 | || |||||| | || || |||| || |||| ||| ||| || | || | Sbjct 11332 CTTC-TCGTACGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCC---AGGC 11387 Query 114747 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGA 114806 | || || | |||||||| |||||||| | || | | ||| || |||| ||||| Sbjct 11388 CAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGA 11447 Query 114807 AGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCC 114864 | || || || ||||||| || |||| | || || || ||| | |||| || Sbjct 11448 ACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGG--GCCCGCTCCAGCTCATTGCC 11505 Query 114865 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 114924 || || |||| |||| || || | |||||| |||||||| || |||||||| | Sbjct 11506 GTGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGAT 11565 Query 114925 CGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAA 114981 |||| || ||||| || | ||| |||||| || || | || ||| | || || Sbjct 11566 GGCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAA 11625 Query 114982 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGAC 115039 || || ||||| || | ||| || | || || |||| || || || ||||| | Sbjct 11626 GACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTC 11685 Query 115040 TTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 115099 | || | || | |||||| | |||||| || ||||| |||| ||||| | Sbjct 11686 --ACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCC 11743 Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159 || || | | ||||| || | ||||| |||||||| ||||| |||| | | | |||| Sbjct 11744 GCACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGG 11803 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 |||||| || | || |||| || || || ||||||||||| || || || ||||| Sbjct 11804 AAGCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGA 11863 Query 115220 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 115279 |||| | |||||||| || ||||||||| | | ||| | ||| ||| Sbjct 11864 GTGAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTA 11923 Query 115280 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 115339 || || || || | || ||||| | ||||| |||||| ||||| | ||| || || Sbjct 11924 TGGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCC 11983 Query 115340 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTC 115398 | | | | ||||| |||||||| ||||||| ||| ||||| || |||| |||| Sbjct 11984 ATCTTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTC 12042 Score = 93.3 bits (102), Expect = 5e-14 Identities = 306/470 (65%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 113565 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 113623 ||||||| |||| ||| ||||||| | || ||||||||||| || |||||||| Sbjct 10188 TGAACTGGATGGCGTCG-GCCTTGGGGCGGGTGCGCAGGTAGTACATGCCGGTCTTGAGT 10246 Query 113624 CCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCA-- 113681 |||| |||||||| ||| | ||||| |||| | || || | | || ||| | ||| Sbjct 10247 CCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGATTGGCCAGG 10306 Query 113682 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAA 113741 |||| | || | |||||||| ||| || || || || |||||||| || | Sbjct 10307 TGAATA--TTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCGGCCGCCATGTCGA 10364 Query 113742 TCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 113801 | || |||| | ||| |||||||| || | || || | || | ||| |||| Sbjct 10365 TGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTGAGCTCACGGGGGA 10424 Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 113861 | | | || || | ||||| | || |||||| | || ||| | Sbjct 10425 TGCTTGCTACGTTCTGCACCGAGCCGCGA---TTACCCATGATCTGGTTGCGGACCTCGG 10481 Query 113862 A---CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 113918 ||| || || || | || || | | || | ||| ||||| | ||| | Sbjct 10482 CATTCCAAAGGCCGCGCTCGATCAGGTCGCCGAGCAGGTACTTGTTGACGATGGTAAATT 10541 Query 113919 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 113978 | ||||| || ||| | | ||| || |||| |||| | ||||| | | |||| |||| Sbjct 10542 CGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCTCCACGGACTCGTTGT 10601 Query 113979 TACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGG 114028 | |||| ||||||||| |||||||| ||||||||||| |||| || ||| Sbjct 10602 TGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGG 10651 >seq1952 Length=85402 Score = 150 bits (166), Expect = 2e-31 Identities = 283/410 (69%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| || ||||| || || ||||| || | || |||| || | ||| || || Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | |||||| | | | || ||||| ||||||||||||| || ||||| Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 10907 ATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGA 10964 | |||||| || || || || || ||| |||| | ||| |||| || || ||| | Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGG-TTGATTTTCACGGGCAACTTCAAAG 11023 | |||||||| || |||||||||| ||| || || | | ||| | | | ||||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC-TCAAAC 26784 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG---CGGCG 11080 || || || || | | ||||| |||||||||||||||||||| || | || | || Sbjct 26785 ATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCAGCC 26844 Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140 | || |||||||| ||| || |||||||| | ||| ||| || || |||||| Sbjct 26845 GCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTCTTC 26901 Query 11141 CCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 || || || || || | || | |||| || |||||| ||||||| Sbjct 26902 CCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 >seq2878 Length=6153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||||| |||||||| |||||| |||| || || || || ||| || || Sbjct 6125 GGCATCAAACCCCTCTTCTTCAGCCAGAATATCGAGCAGAACGACCCACTGAAAAATATA 6066 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAA 126225 || |||||| ||| ||||||| || ||||| || || ||| ||| |||| ||| | Sbjct 6065 CCTTCCACAGCCGCAAACGCAATCAGGCGCTCGGCGAAAGAG-GCGTACTTCCGGTCGCA 6007 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||| | | |||||||||||||| || ||| || || || | || || | | Sbjct 6006 CCACCTGAGGGCCCACTGCGCCTTCCGACGGACACAAGGCACAGTATCAATGGCATTGAG 5947 Query 126286 GAGTTCCTTCTTTTC-TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 126344 ||| | | ||| || ||| | || ||||||||| | || ||||| || ||| | Sbjct 5946 GAGCTTGTGCTTCTCTTGACCGTTC-TTGATGTACGTGTCGATGAGGAGGGAGTATACCT 5888 Query 126345 CGCCGTGGA 126353 ||| ||||| Sbjct 5887 CGCTGTGGA 5879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597309911051080