Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2518 154 2e-32 seq35 145 8e-30 seq4787 100 3e-16 >seq2518 Length=13831 Score = 154 bits (170), Expect = 2e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||||||||| || |||||| || || || || || | ||| || ||| | Sbjct 5317 ACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCC 5258 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || || ||||| || ||||| ||||| |||||||| || | || | || |||||| Sbjct 5257 GTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTT 5198 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| ||||| || | || | | |||||||| | |||||||||| ||||| Sbjct 5197 GTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGAT 5138 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || ||||| || ||||| || ||||||||||| ||| Sbjct 5137 TGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTTC 5098 >seq35 Length=30318 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 12431 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12490 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 12491 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12550 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | ||||| || | ||||||| Sbjct 12551 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATG 12610 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 12611 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||| |||||| || | || |||||| || || ||||| |||| Sbjct 10822 ACCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGA 10881 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| ||||| ||||||||||||| || Sbjct 10882 AAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 10941 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || || || | || | | ||||||||| | || || Sbjct 10942 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11001 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||| |||||||| | ||||| || ||||||||||| Sbjct 11002 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 11063 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11122 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 11123 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11182 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 11183 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11242 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 11243 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 11291 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11350 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 11351 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11410 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 11411 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11470 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 11471 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 11519 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11578 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 11579 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11638 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 11639 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11698 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 11699 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 11747 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 11806 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 11807 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 11866 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 11867 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 11926 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 11927 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 11975 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12034 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 12035 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12094 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 12095 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 12154 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 12155 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 12203 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12262 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 12263 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12322 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | || || || | ||||||| Sbjct 12323 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATG 12382 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| | ||||| || ||||||||||| Sbjct 12383 GTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | || |||||| || || ||||| |||| || || || | Sbjct 12659 CGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCA 12718 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 12719 TCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 12778 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || || | || | | ||||||||| | ||||| || | ||||||| Sbjct 12779 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATG 12838 Query 42174 GTTTTGCCC 42182 || |||||| Sbjct 12839 GTCTTGCCC 12847 >seq4787 Length=11161 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | |||||| || || || || |||||||||||||| | || | | ||||||| Sbjct 6622 TCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTG 6563 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| || ||||| || | || | | |||||||| | || ||||||| || ||| Sbjct 6562 TCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAATG 6503 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||||||||| Sbjct 6502 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 6468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173070773840