Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3524 581 3e-161 >seq3524 Length=35516 Score = 581 bits (644), Expect = 3e-161 Identities = 1240/1845 (67%), Gaps = 36/1845 (2%) Strand=Plus/Minus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || ||||||||||| ||||| ||||||||||| |||| || |||||||| Sbjct 12018 TTCAAGACGCTGGAGAAGTCCTACCTGCTCAAGATGGACGGCATCGTCATGGAGCGACCC 11959 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGC-CGAATGTTTT 93851 || || || | |||||||| ||||| || || || | ||| || || || Sbjct 11958 CAGCACATGATCATGCGCGTAGCCATTGGAATCCATAAGGAGGACGTGGACGCGGCGATT 11899 Query 93852 GCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAA 93911 | | || || |||| | ||| | || ||||| || || || ||||| Sbjct 11898 GAGACCTA-CAATCTCATGTCCCAGAAGCTCTTCACTCACGCCACGCCTACACTCTTCAA 11840 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || || ||| ||| ||| | || || || ||||| |||| | |||| ||||| Sbjct 11839 CGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGCTTCCTTCTGACCATGAAGGAGGACTC 11780 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 |||| ||| || | |||| |||||| | |||||| ||||||| || | ||| || || Sbjct 11779 CATCGACGGTATCTATGACACTCTCAAGCAATGTGCGGCCATCTCCAAGTTCGCAGGTGG 11720 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 || || || |||| || | || || | | || |||||||| || | || || Sbjct 11719 GATTGGTGTCTCGATCCATAACATCCGGGCGCGTGACTCGTACATCCGTGGCTCAAACGG 11660 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 |||||||||||| |||| || ||||| || ||||||||| || |||| ||||||||||| Sbjct 11659 GACCTCCAACGGCATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTGGA 11600 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 ||||||||| || | | | ||||| |||||||| |||| || |||||||||||||| || Sbjct 11599 CCAGGGTGGGGGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGGCACGCCGA 11540 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 | | ||| | || ||||| |||||||||||||| || |||||| ||||| | || Sbjct 11539 TATCTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAATGAGCTGGAGCGGGCCCGCGA 11480 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 | | |||||||| |||||| ||| || || || ||| | ||||| ||||| || || Sbjct 11479 CTTGTTCTACGCCCTCTGGACGCCTGATCTGTTCATGCAGCGCGTGGAGAACGACGGCGA 11420 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTT 94391 |||| ||| || || ||||| || || || || ||| | ||||| |||||| | || Sbjct 11419 CTGGTCTCTGTTCTGCCCCAACGAGTGCCCTGGCCTGGCGGACGTATGTGGAGAGGAATT 11360 Query 94392 TGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAG 94451 | | | |||||| ||||| | |||||||| | ||||| || | || Sbjct 11359 TAAGCAGCTGTATGAGACGTACGAGAAGAGTGGCAAGGCGCGCAAGGTGATCAAGGCCCA 11300 Query 94452 GAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTT 94511 | |||||||| | | | ||||| ||||||||||||||| |||||||| || | || Sbjct 11299 GCAGCTGTGGTTTGCGGTGTTGGACTCACAGGTGGAGACGGGCACGCCCTATATGCTCTT 11240 Query 94512 CAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAA 94571 |||||| | ||| |||||| ||||||||| | || || || |||||| || || Sbjct 11239 CAAGGATGCCTGCAATCTCAAGTCGAACCAGCAGAATCTGGGAGTTATCAAGTCTTCCAA 11180 Query 94572 TCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGG 94631 |||||||| ||||| |||||||||| | || || ||| |||| || || ||||| | Sbjct 11179 CCTGTGCACGGAGATCATCGAGTATACGGCGCCCGATGAGGTTGCCGTCTGCAACCTTGC 11120 Query 94632 CTCCATCAACCTGTCCACTTTCGTGCGAGATG--CCTACACGTCTACTGCTTCGTTCGAT 94689 ||| ||||||| || | |||||||| || | || || | | | | | | | Sbjct 11119 CTCTGTCAACCTCTCGGCGTTCGTGCGGGAGGAACCAAC-TGGCAGCGGTAAAGCCCCCT 11061 Query 94690 CTGGAGGAGCTTGTGAACTTC-GCGGGA--AGGATGGTCTTG------AACCTGAACAGG 94740 || | || || | | || || || | | ||| || ||||| ||| | Sbjct 11060 CT-TATGACCTACAGCGCCTCTACGAGATCACCAAGGTGGTGACGCGCAACCTCAACCGT 11002 Query 94741 GTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGG 94800 || ||||||| ||||| |||||||| ||||| || ||| ||| || |||| || Sbjct 11001 GTTATCGACATCAACTTTTACCCCGTGGAAGAGGCTAAGCGCTCCAACATGCGGCATAGG 10942 Query 94801 CCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTAC 94860 ||| ||||||||||||| ||||| || ||||| ||| | | | ||||| |||| | Sbjct 10941 CCCGTCGGCATCGGCGTGCAGGGCTTGGCGGATGCGTTCATCAAAATGCGCTACCCCTTC 10882 Query 94861 GACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCC 94920 || || | |||||| ||||| | || | ||||| | ||| || | ||| ||| Sbjct 10881 GAGTCGGCAGACGCGCTCCAGCTGAATAAGGACGTCTTCGAGACCATGTACTTCGGCGCC 10822 Query 94921 ATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGA 94980 | || ||| | | | || | ||| ||| || |||| | ||| ||| Sbjct 10821 GTCGAAGCCTCCATGGAAATCGCAATGAAGGAGGGC---CCGTACGAGACCTTCTCCGGT 10765 Query 94981 TCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTG 95040 |||||| | ||||| | || ||||||||| | ||||| |||| ||||| | Sbjct 10764 TCGCCCATCAGCAAGGGCGTCTTCCAGTTCGACATGTGGGGCGTGACCCCCTCCACGCGC 10705 Query 95041 TACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTT 95100 | || |||| | || |||| | || | || || ||| || | ||||| Sbjct 10704 TGGGATTGGGCCGGCCTGCGCGTCAAAGTCCAGGAGCATGGCGTGCGCAATTCCCTGCTG 10645 Query 95101 GTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAA 95160 |||| ||||||||||| ||||||||||| || ||||| |||||||||||||| | || Sbjct 10644 CTGGCGCCCATGCCCACCGCCTCCACGGCCCAAATCCTGGGCAACAACGAGTCCGTGGAG 10585 Query 95161 CCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 |||||||| |||||| |||| | || ||||| || || ||||| || || ||||| Sbjct 10584 CCCTTCACGTCCAACATGTATTCGCGCCGCGTGCTGGCGGGCGAATTTACCATCGTCAAC 10525 Query 95221 AAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA- 95279 ||| |||| || | ||||||| | || | ||| || | ||||| ||||| Sbjct 10524 AAGTACCTGCTCGGCGACCTGATCGAGCGCGGCCTTTGGAATGCCGAGGTCCGCAACCAG 10465 Query 95280 ---ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA--ATACCGGAGGACATC 95334 | | || || |||||| || |||||| | |||| || || || || Sbjct 10464 ATCATGGGTAATCG----CGGCTCGGTGCAGAACGT--AGCAAGCATCCCCCGTGAGCTC 10411 Query 95335 AAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC---AGCGCGTGATACTCGACCACGCG 95391 || | ||| || ||||||||||||||||||| || || |||| | ||||| ||| Sbjct 10410 AAAGAGCTATATAAGACCGTGTGGGAGATCCGGCAGAAGTGCGTCA---TCGACATGGCG 10354 Query 95392 GCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCC 95451 |||| ||||||| ||| ||| ||||| ||||| | ||| Sbjct 10353 GCCGACCGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAATATTCACCTGGCCAATCCC 10294 Query 95452 AGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGT 95511 | | || | | || |||||| || || |||| ||||| ||||||||||| Sbjct 10293 ACGCCCGCCCAGCTCACCTCCATGCACTTTTATTCCTGGAAGAAGGGACTCAAGACCGGC 10234 Query 95512 ATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 ||||| || |||| ||| | || ||||| ||| |||| |||||| Sbjct 10233 ATGTACTACCTGCGCACCCGCCCCAAGGCCGACGCCATCCAGTTC 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494687017181960