Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4035 147 2e-30 seq159 102 8e-17 >seq4035 Length=10978 Score = 147 bits (162), Expect = 2e-30 Identities = 581/898 (65%), Gaps = 31/898 (3%) Strand=Plus/Plus Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATCTCGGC 153658 || || |||| ||||| || ||| ||| |||| | ||| | ||||| | ||||| | Sbjct 7192 ATCGAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTCG-TATACTGGATAATCTCCGT 7250 Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 ||| | ||| || | || || ||||||||||||||||| || |||| ||||| Sbjct 7251 GCACAAGTTCGAGCTTCGAATCGTCCCTAAATTTTGCTGATTGCTCTTAAGATTACACGC 7310 Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCT 153775 ||||||||||||||| || || ||| || |||| || | || | ||| |||| Sbjct 7311 GTCTTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTGTGAGTCCAGGATGGCGAACCA 7370 Query 153776 ATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCT-CGCTCTCGTATCGCTCGT 153834 |||||| ||||| ||||| || || ||| | | |||||| || | Sbjct 7371 ---CAGGTCTTGCGCACGCACTGTCTTTTT-TACTTTCCCAGCTTTTTCGTATTGCAGAT 7426 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 |||| ||||||||| | ||| | |||||| | | ||| |||||||||| ||||||| Sbjct 7427 ACAGGACCTCAAACTCTTTGCCATGACAGTCGCCCAAGCCAGGACACTGATCAGGACACA 7486 Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 |||| ||||| || | || | | || | ||| |||| ||| || | ||| ||| Sbjct 7487 TCAGTGACCAAATCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATCCAAAGCC 7546 Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGT--TTCAGATTGAG 154012 |||| | ||||||||||||| | || ||| |||||| | | | || || | || Sbjct 7547 CGTAAAAGAGGTCGCGCGCCCGGGCTTCTTCC-TTCCCATGGTTCTTCCTTAAG-TCAAG 7604 Query 154013 CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT 154072 ||| |||| || || ||||| || |||||||| | || | || || ||||| Sbjct 7605 CACCTCGAAGATATCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGGTCGCTT 7664 Query 154073 ---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAG 154129 ||| ||||||||||| | || | | || || || |||| |||||| ||| Sbjct 7665 CCCTCCCCCCTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAA 7724 Query 154130 GCCGCTTGCGGTGCCGTTGGTCGAATTGATCT-TGCTGCCGCGGGCGCGCACTTGATGCA 154188 ||| | || || || || ||||| | ||| ||| | ||||| | | |||| Sbjct 7725 GCCATTACTCGTTCCCTTCGTTCCTTTGATGTACGCT-CCGTGCGCGCGAATGTTGTGCA 7783 Query 154189 CGTTAACGCCAAT----GCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 | | |||||| |||||||| |||| ||| | ||||| | || || Sbjct 7784 CAGACAAGCCAATCCCACCCGCCGCCTTACT----GATGACCGCGCACTGTTTCAAGGTG 7839 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCG--AGCAAGAAACACGAACACATTT 154302 ||||| || | || ||| ||| | | | | |||||| ||| |||| | Sbjct 7840 TCATAGATCCCCACAATCGAATC--CGCCTTCATAGTTAAGAGGAAACATGAAGACATCT 7897 Query 154303 GCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGC 154362 | || | ||||| || || ||| | ||||| |||||| ||||| || | | Sbjct 7898 GGGGGAAACGCGTCCCGGCGTGAAATAAAGTGGGCGACGCGTGAATAAACCACTTATTAC 7957 Query 154363 TCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 |||||| ||||| |||| || | || | |||| || ||||| || ||||| | Sbjct 7958 TCATCAATTCATACGTCTCGAGCGCCGCCTCTAAGTCATTTCCATGAATCCCCAGCGCCA 8017 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 ||||||| | ||| | ||| || || || | || | || ||| |||||| || || Sbjct 8018 CGCGCATCAACATATACTGTGGGCGCTCCACCACCTTTTTCCCAAGCTTCAACAGGTA 8075 >seq159 Length=12779 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||||| |||| ||| | || | | |||||||| |||||||||||||| Sbjct 10475 CCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAA 10534 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | |||| || ||||| || || || || Sbjct 10535 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGG 10594 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | |||||| | | ||| || Sbjct 10595 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACA 10654 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || ||||| || || || || |||||||||||| Sbjct 10655 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGCT 10705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226104608720