Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq5733 785 0.0 seq225 628 3e-175 >seq5733 Length=57551 Score = 785 bits (870), Expect = 0.0 Identities = 751/955 (79%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || |||||||||||||| || ||||| |||||||| |||||||| || | | |||||||| Sbjct 40880 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 40939 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 |||| | ||| ||||| ||||| | ||||||||||||| ||||| | || |||||| Sbjct 40940 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTG 40999 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 |||||||||||||| | ||| |||||||| || ||||||||||||||||| |||||||| Sbjct 41000 AAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATA 41059 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 || |||||||||||||| || | ||||||||| | | ||| ||||||||||| ||| Sbjct 41060 CCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCG 41119 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 ||||||||||| | ||| |||||||| ||||| ||||| ||||||||||| || |||||| Sbjct 41120 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 41179 Query 7844 TCTTGACCGAACTTATAACCATAGTT--CTGGGACTCAGACT-CAGTGGTTTCACGAACC 7900 ||||| ||||| || ||||| ||||| | | || | | || |||| |||||| | Sbjct 41180 TCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGT---TTCACGGATT 41236 Query 7901 AGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCA 7960 | | ||| |||||||| ||||| ||||| |||||||| | ||| |||||||| |||||| Sbjct 41237 AAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCA 41296 Query 7961 GCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGC 8020 || || || ||| ||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 41297 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 41356 Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCG 8080 ||| ||||||| |||||||| || || | ||||||| | |||||||| |||||| || Sbjct 41357 ATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCA 41416 Query 8081 AAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAG 8140 | || || || | |||||| |||||||||||||| |||||||| ||| | ||||| | Sbjct 41417 ATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 41476 Query 8141 ATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG 8200 ||||| |||||||| |||| |||||| ||||||||| ||||| |||||||| ||| || Sbjct 41477 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 41534 Query 8201 --ATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACT 8258 | ||| | | |||||| || | || |||||| |||||||||||||||| ||||||| Sbjct 41535 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACT 41594 Query 8259 CATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAG 8318 | || | ||| || |||||||| | || |||||||| | |||||||||||||||| || Sbjct 41595 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAG 41654 Query 8319 GAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCAC 8378 ||| ||| ||||| | ||| |||||||| || || | || || ||||| || ||||||| Sbjct 41655 GAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 41714 Query 8379 GGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAG 8438 |||| || || || || || ||||| || |||| |||||||| |||||| || | | || Sbjct 41715 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 41774 Query 8439 CAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 | | | | || || ||||| | |||||||||||||||| || | ||| || Sbjct 41775 CTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 41829 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 54360 GGATTTGAACCAACGTAGGCTGAGCCAGCGGATTTACAGTCCGCCCCCTTTAACCACTCG 54301 Query 176193 GACACCTACCCTAACT 176208 | || | |||||| || Sbjct 54300 GGCATCGACCCTATCT 54285 >seq225 Length=49998 Score = 628 bits (696), Expect = 3e-175 Identities = 753/1020 (74%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || ||||| || | ||| || || || || || |||||||| |||||||||||| Sbjct 38841 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38782 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 || || || |||||||| | | | ||||||||| |||| ||| || || || ||| Sbjct 38781 TGGTCTTGTGCAGCCATCCACGATCTAATACCTTCATTTAATAAGATATTTTTAGTGTAG 38722 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || |||||||| || || || | | |||||| || || || || || ||| Sbjct 38721 AAAGTTTCAAATTCTGGATCTTCAGCCGCACGAAGCTCTTGAGATACGAAATCGTATGCT 38662 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || | || | ||| | ||||| |||||||| | ||||| | ||| | |||||| Sbjct 38661 CTTAAATTTAATGCTAAACCAACAATACCAAAAGAACTTGTCCATAAACCTGTTACAGGA 38602 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | ||| |||||||| |||||||| || || ||| || | |||||| || ||| Sbjct 38601 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTCGAGAAAGCTACACCAAAAATTTGA 38542 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 |||||||| | ||| || || ||||||||||| || || ||| |||||| || |||| Sbjct 38541 GACCAGAATCTATTCGCTGTTACCATCGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 38482 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || ||| || |||| |||||||||||||| | ||||| ||||| || || || Sbjct 38481 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTATTTTCTACTGTGGCTCCA 38422 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| ||| | | ||||| || ||||| || |||||||||||||||||||| || || Sbjct 38421 TGAATTGCAGATAATAATGCACCTCCTAAAATCCCTGCTACACCCATCATATGGAATGGA 38362 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || || |||||||| ||||| || |||| ||| | ||| || ||||| || |||||||| Sbjct 38361 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAAAATCGGAAAATAGCTGCAACC 38302 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || || ||||||||||| | ||||| |||||||| || | || ||||| Sbjct 38301 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAAATTAAGAATACAGAA 38242 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA 6916 ||||| || ||||| || ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 38241 ACAAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTGTATGGACGAATACCTACAAGA 38182 Query 6917 CGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 || |||||||| || || || || || ||| || || | |||| || ||||| || || Sbjct 38181 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCGTGTAGTGC 38123 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 | ||||| ||||| ||| |||| ||| ||||| || ||||||||| || ||||| || Sbjct 38122 TATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGCGCTTCAGG 38063 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 ||||||| | || || || || || | | || || || |||||||| || |||| Sbjct 38062 TCCCCATAATAAAATTAATGAGTGACCCATACTGTTTGCTGGTGTTGATACTGCTACAGT 38003 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 | ||| |||||||| || | ||| ||||| || | || ||||| ||||| || || Sbjct 38002 TAAGAAGTTACATCCTTCTAAATAAGAAGATGCTAATCCATGAGTATACCAAGATGTAAC 37943 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAG 7215 ||||| || || || | ||| || || | ||| || | || || ||||| | | ||| Sbjct 37942 AAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCGGTTGGGAATAATAAAAG 37883 Query 7216 ACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||||||||||||| ||| ||||| | ||| || || | ||||||||||| || ||||| Sbjct 37882 GCCTGACCAACCAATAAACACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAAA 37823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622079299347440