Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3524 190 3e-43 seq1952 159 4e-34 >seq3524 Length=35516 Score = 190 bits (210), Expect = 3e-43 Identities = 588/897 (66%), Gaps = 17/897 (2%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 || ||||| || || ||||| |||| || ||| ||| || |||| |||| || Sbjct 11153 GTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGG 11212 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| || || ||||||||| |||||||||| ||||| ||||||||| || Sbjct 11213 TTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGT 11272 Query 116593 GACTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCT 116650 || | | | || ||| | | | | | || | || | ||| | || ||| || Sbjct 11273 GAGTCCAACACCGCAAACCACAGCTGCTGGGCCTTGATCACCTTGCGC-GCCTTGCCACT 11331 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCT 116709 | || |||||| | || || || ||| || || || ||| | || | || || Sbjct 11332 CTTC-TCGTACGTCTCATACAGCTGCTTAAATTCCTCTCC-ACATACGTCCGCCAGGCCA 11389 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || || | || ||||| |||||||| | || | | ||| || |||| |||||| Sbjct 11390 GGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAAC 11449 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCT 116827 || || || ||||||| || |||| | || || || ||| | |||| || | Sbjct 11450 AGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGG--GCCCGCTCCAGCTCATTGCCGT 11507 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | || |||| |||| || || | |||||| |||||||| || |||||||| | | Sbjct 11508 GGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGG 11567 Query 116888 CGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 ||| || |||||||| | ||| |||||| || || | ||||| |||| || | Sbjct 11568 CGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGA 11627 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTT 117002 | || ||||| || | ||| || | || || |||| || || || ||||| | Sbjct 11628 CACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCAC 11687 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | || | || | ||||| | |||||| || ||||| |||| ||||| || Sbjct 11688 GC--GCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGC 11745 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | | ||||| || | ||||| || ||||| ||||| |||| | | | ||||| Sbjct 11746 ACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAA 11805 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 |||| || | || |||| || || || ||||||||||| || || || ||||| | Sbjct 11806 GCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGT 11865 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 ||| | |||||||| || ||||||||| | | | | | ||| ||| || Sbjct 11866 GAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATG 11925 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302 || || || | || ||||| | ||||| |||||| ||||| | ||| || || | Sbjct 11926 GATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCAT 11985 Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | | ||||| |||||||| ||||||| ||| |||||| || |||| |||| Sbjct 11986 CTTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTC 12042 Score = 102 bits (112), Expect = 1e-16 Identities = 313/478 (65%), Gaps = 12/478 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 115584 ||||||| |||| ||| ||||||| | || ||||||||||| || |||||||| Sbjct 10188 TGAACTGGATGGCGTCG-GCCTTGGGGCGGGTGCGCAGGTAGTACATGCCGGTCTTGAGT 10246 Query 115585 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCA-- 115642 |||| |||||||| ||| | ||||| |||| | || || | | || ||| | ||| Sbjct 10247 CCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGATTGGCCAGG 10306 Query 115643 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAA 115702 |||| | || | |||||||| ||| || || || || |||||||| || | Sbjct 10307 TGAATA--TTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCGGCCGCCATGTCGA 10364 Query 115703 TCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762 | || |||| | ||| |||||||| || | || || | || | ||| |||| Sbjct 10365 TGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTGAGCTCACGGGGGA 10424 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822 | | | || || | ||||| | || |||||| | || ||| | Sbjct 10425 TGCTTGCTACGTTCTGCACCGAGCCGCGA---TTACCCATGATCTGGTTGCGGACCTCGG 10481 Query 115823 A---CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 ||| || || || | || || | | |||| ||| ||||| | ||| | Sbjct 10482 CATTCCAAAGGCCGCGCTCGATCAGGTCGCCGAGCAGGTACTTGTTGACGATGGTAAATT 10541 Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 | ||||| || ||| | | ||| ||||||| |||| | ||||| | | |||| |||| Sbjct 10542 CGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCTCCACGGACTCGTTGT 10601 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 | |||| ||||||||| |||||||| ||||||||||| |||| || ||| ||||| Sbjct 10602 TGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGGAATTGCG 10659 >seq1952 Length=85402 Score = 159 bits (176), Expect = 4e-34 Identities = 285/410 (70%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| || ||||| || || ||||| || | || |||| || | ||| || || Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 |||||||| | |||||| | | | |||||||| ||||||||||||| || ||||| Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 12822 ATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGA 12879 | |||||| ||||| || || || ||| |||| | ||| |||| || || ||| | Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGG-TTGATTTTCACGGGCAACTTCAAAG 12938 | |||||||| ||||| ||||||| ||| || || | | ||| | | | ||||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC-TCAAAC 26784 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG---CGGCG 12995 || || ||||| | | ||||| |||||||||||||| ||||| || | || | || Sbjct 26785 ATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCAGCC 26844 Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 | || |||||||| ||| || |||||||| | ||| ||| || || |||||| Sbjct 26845 GCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTCTTC 26901 Query 13056 CCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || || | || | |||| || |||||| ||||||| Sbjct 26902 CCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613462329617160