Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3524 170 3e-37 seq4035 91.5 2e-13 >seq3524 Length=35516 Score = 170 bits (188), Expect = 3e-37 Identities = 405/597 (68%), Gaps = 19/597 (3%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGC---AGGCCTGCTTCTCAGATAGTACA 203894 ||||||| ||||||||||| ||||||| |||| || | | | | ||| ||||||| Sbjct 10176 TCTTGTCGACCGTGAACTGGATGGCGT---CGGCCTTGGGGCGGGTGCGCAGGTAGTACA 10232 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACG 203953 |||||||||| || ||||||| ||| || | ||||||||| | || | || || Sbjct 10233 TGCCGGTCTTGAGTCCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCGGGCG 10292 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 |||| | ||||| |||||| || || |||||| |||| ||| | | | | || || Sbjct 10293 -TGGGATTGGCCAGGTGAATATTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCG 10351 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| | ||| | | ||||||| ||||||||||| ||||| | | ||| || Sbjct 10352 GCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTG 10411 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CA 204131 | | || | ||| | |||| ||| | ||||||| | |||| | ||| Sbjct 10412 AGCTCACGGGGGA-TGCTTGCTACGTTCTGCACCGAGCCGCGATTACCCATGA-TCTGGT 10469 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | ||| | ||| | ||| | |||||| || | | ||||| ||||| Sbjct 10470 TGCGGACCTCGGCATTCCAAAGGCCGCGCTCGATCAGGTCGCCGAGCAGGTACTTGTTGA 10529 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| ||| || || | |||||| | || | ||| |||| ||||| || || | Sbjct 10530 CGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCTCCA 10589 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | || || || ||| ||| ||||||||||| ||||| |||| Sbjct 10590 CGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCA 10649 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTG-CGCTTCAGAGAGGTCCAGTCGTGCATC 204370 |||| |||||||| || | | ||||| || ||| ||| || ||| || || | Sbjct 10650 GGGAATTGCGCACGCCATGCTCCTGGACTTTGACGC-GCAGGCCGGCCCAATC--CCAGC 10706 Query 204371 GC--ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 || ||| |||||||||||||||||||||| |||| ||| | |||| ||||| Sbjct 10707 GCGTGGAGGGGGTCACGCCCCACATGTCGAACTGGAAGACGCCCTTGCTGA-TGGGC 10762 Score = 145 bits (160), Expect = 1e-29 Identities = 425/644 (66%), Gaps = 12/644 (2%) Strand=Plus/Plus Query 205100 ACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC 205159 |||||| ||| || || || | ||||| || | ||||||||| |||| | | Sbjct 11375 ACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCC 11434 Query 205160 ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATT 205219 || | || ||| ||||| || |||| ||| |||| |||| || ||||||| | Sbjct 11435 ACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGC-TC 11493 Query 205220 CCG-TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACG 205277 | | || | || ||||||| || ||||| || || | || ||||||||||| | Sbjct 11494 CAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGG-AACTCGAAGATATCGGCGTGCCAGG 11552 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337 |||| | | | ||| | | ||| | |||| ||||||||||||||| ||| | Sbjct 11553 GCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGG 11612 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397 | | ||||||| || |||||||| ||||| | ||||||| ||||||||| | || Sbjct 11613 CCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCAC 11672 Query 205398 TGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 |||| |||| | |||| | ||| ||| | | |||||||| || | ||| Sbjct 11673 GGATGTACGAGTCACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACT 11732 Query 205458 TGGCGATCTGGGCGCAC---TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCG 205514 ||| || ||| ||||| |||| |||||| ||||| || ||||||| || ||| Sbjct 11733 TGGAGA--TGGCCGCACATTGCTTG-AGAGTGTCATAGATACCGTCGATGGAGTCCTCCT 11789 Query 205515 CCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGC 205573 || |||| || |||| || | |||| ||| | ||||| |||| |||||| Sbjct 11790 TCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCG-GCGTGCCGGCGTTGAAGAGT 11848 Query 205574 GTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTC 205633 || || ||||||| ||||| |||||| | || |||||||||| | | | Sbjct 11849 GTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCG 11908 Query 205634 TCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCC 205693 |||| || || || || ||||| | | ||||| | ||| || |||| |||| Sbjct 11909 TCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCC 11968 Query 205694 ATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 || || | ||| || ||||||||| |||| |||| || || Sbjct 11969 ATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTCCAGCGT 12012 >seq4035 Length=10978 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 205127 GGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATC 205186 ||||||||||| ||||| ||| ||| || | ||| |||| |||||||| ||| ||| Sbjct 7480 GGACACATCAGTGACCAAATCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATC 7539 Query 205187 CACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAG 205246 || || |||||||| || || || |||| | | || | ||| ||||||| | ||| Sbjct 7540 CAAAGCCCGTAAAAGAGGTCGCGCGCCCGGGCTTCTTCCTTCCCATGGTTCTTCCTTAAG 7599 Query 205247 TCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 || || || || | || || || ||||| ||||| | | | || | ||| || || Sbjct 7600 TCAAG-CACCTCGAAGATATCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGG 7658 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 | ||| || ||||| || || |||| || ||| || || |||||||| || Sbjct 7659 TCGCTTCCCTCCCCCCTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGG 7718 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 ||||| || || || || ||||| | |||||| Sbjct 7719 CACCAAGCCATTACTCGTTCCCTTCGTTCCTTTGATG 7755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||||||||| ||||||||| || | || ||| || | | || |||||||| || Sbjct 5997 CTTGTCCACCGTGAATTGAATGGCGCTCGCTGCCGGCTTGGTCCGAAGGTAGTACATCCC 6056 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCAT 203934 ||||| |||||||||| ||| |||| | ||||| Sbjct 6057 CGTCTTGAGGCCCTTCTTCCAGGCGTAAAAATGCAT 6092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795097044336560