Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq35 145 2e-29 seq2518 136 9e-27 seq159 116 9e-21 seq4787 100 7e-16 >seq35 Length=30318 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 10829 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 10888 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 10889 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 10948 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 10949 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 11008 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 11009 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 11046 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 11057 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 11116 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 11117 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 11176 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 11177 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 11236 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 11237 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 11274 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 11285 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 11344 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 11345 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 11404 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 11405 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 11464 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 11465 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 11502 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 11513 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 11572 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 11573 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 11632 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 11633 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 11692 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 11693 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 11730 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 11741 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 11800 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 11801 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 11860 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 11861 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 11920 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 11921 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 11958 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 11969 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 12028 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 12029 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 12088 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 12089 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 12148 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 12149 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 12186 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 12197 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 12256 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 12257 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 12316 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | ||||| |||| | Sbjct 12317 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGC 12376 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 12377 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 12414 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 12425 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 12484 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 12485 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 12544 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | || || |||| | Sbjct 12545 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGC 12604 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || || || ||||| Sbjct 12605 GTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTG 12642 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 12653 CGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 12712 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || ||||||||||| ||||||||||| || || || Sbjct 12713 CGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCC 12772 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| ||||| | | || || |||| | Sbjct 12773 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGC 12832 Query 199589 GTGATCGTCTTACCC 199603 ||||| ||||| ||| Sbjct 12833 GTGATGGTCTTGCCC 12847 >seq2518 Length=13831 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| |||| ||| ||||| | || || | || || ||||| ||| Sbjct 5304 TGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCCTCCAGTTGC 5245 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||||||||| |||||||| |||||| || || || ||||| |||||| Sbjct 5244 TTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTT 5185 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||||| |||| |||||| | | || ||||| | ||||| ||||||||||| Sbjct 5184 TGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTCTTACCCGTC 5125 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| Sbjct 5124 AGGGTCTTGACGAAGATTTG 5105 >seq159 Length=12779 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || ||||| | || |||||||| || | ||||||||| | | || Sbjct 10480 TCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGT 10539 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| || || |||||||| |||||||| || || || || Sbjct 10540 GCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCC 10599 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| |||||||||||||| |||| ||||| | | || ||||| | Sbjct 10600 TTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAG 10659 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 10660 GGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 10698 >seq4787 Length=11161 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| ||||| ||||| || ||||||||||| || || || || Sbjct 6625 CCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCC 6566 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||||||||||||| |||| ||||| | | || ||||| | || Sbjct 6565 TTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTA 6506 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || || || || ||||| Sbjct 6505 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTG 6471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178833221037017