Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq225 145 6e-29
>seq225
Length=49998
Score = 145 bits (160), Expect = 6e-29
Identities = 205/287 (71%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
|||||||| || || || || | | ||| || | || ||| ||||| || | |||
Sbjct 35550 TCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCAAATACACCA 35491
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
||| ||| |||| | |||||| || |||||||| | |||||| || | ||
Sbjct 35490 TCTCCAACTTCTAAAATTGAAACATCAAATGTACCACCACCTAAATCAAAGATTAATA-- 35433
Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206
|| |||| || ||| |||| || | |||||| |||| || || || |||||||||
Sbjct 35432 -TCGTTTCATTTGCTT---TTTTGTCTAAACCATAAGCAAGTGCTGCTGCTGTTGGTTCA 35377
Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266
|||||||| | ||||| | | ||| ||||| | || || ||||| || |||||||
Sbjct 35376 TTAATAATACGTAAAACTTCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTGTCGC 35317
Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313
|| |||||||||||||||||||| || |||||||| || | |||||
Sbjct 35316 TGAGAATCGTTAAAATATGCAGGCACTGTAATAACTGCTTTTGTTAC 35270
Score = 141 bits (156), Expect = 7e-28
Identities = 224/323 (69%), Gaps = 15/323 (5%)
Strand=Plus/Minus
Query 322052 AAATCAATTAGAATATGATTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTA 322111
|||||| || |||| |||||||| | |||||||||| ||||| || ||||| ||
Sbjct 35583 AAATCAGCTAAGATATATTTCATTATTGCAGAGTCAAAATCATCTCCACCTAAATGACTA 35524
Query 322112 TTACCACCTACTGCTAATGTTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCT 322171
| |||| | ||||||| | |||||| |||| | | | | | ||||||||
Sbjct 35523 TCACCAGCAGTTGCTAATACTTCAAATACACCATCTCCAACTTCTAAAATTGAAACATCA 35464
Query 322172 AAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTT 322231
|| || ||| | ||||| ||| | | | || | ||| ||| ||||
Sbjct 35463 AATGTACCACCACCTAAATCAAAGATTAATA------------TCGTTTCATTTGCTTTT 35416
Query 322232 TCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACA 322291
| | ||||||| || ||||| |||||||| |||||||||||||| || | |||
Sbjct 35415 T---TGTCTAAACCATAAGCAAGTGCTGCTGCTGTTGGTTCATTAATAATACGTAAAACT 35359
Query 322292 TCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATAT 322351
|||||||||||||| ||| ||| || || ||||||| ||| | || |||||||||
Sbjct 35358 TCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTGTCGCTGAGAATCGTTAAAATAT 35299
Query 322352 GCTGGTACAGTAATAACTGCTTT 322374
|| || || ||||||||||||||
Sbjct 35298 GCAGGCACTGTAATAACTGCTTT 35276
Score = 136 bits (150), Expect = 3e-26
Identities = 316/471 (67%), Gaps = 23/471 (5%)
Strand=Plus/Minus
Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329
||||||||||| || || | ||||||||| || || ||||| || || ||||| ||||
Sbjct 36316 AAGAATACCATCTGCGTCAATATCAAATGTTACCTCGATTTGTGGTACACCTCTAGGAGC 36257
Query 517330 AGGTGGGATCCCTTCCAAATT--AAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 517387
| | || |||||| || ||||| || | | | ||||||||| | | |
Sbjct 36256 CGCCGAAATAT-TTCCAAGTTCGAAATGG-CCTAAACTTTTATTATCTGAGGCAAGTAAA 36199
Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 517447
|||||||| | | | |||||| ||| | |||||||||| | ||||| ||||
Sbjct 36198 CGTTCACCTTGTAGTACATGGATATCTACTTTTGGTTGATTATCTTCAGCAGTTGAAAAT 36139
Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507
| | |||| || ||||||||||||||||| ||||| || | ||||| | |||
Sbjct 36138 GTTTCTGTTTTTGTAGCTGGAATTGTTGTGTTTCTTTCAATCATTCTAGTCATTAGACCT 36079
Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567
|| |||||| | || | ||| | ||| || ||||| | || | || | |
Sbjct 36078 CCGATTGTTTCAACTCCTAAAGATAAAGGTGTTACATCTAATAATAAAACA--------T 36027
Query 517568 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 517627
||| ||| | ||| | |||| || | | ||||||||| ||| ||||||| ||
Sbjct 36026 CTTTGATC----TCGCCAGCTAGAACCGCGCCATTAATAGCAGCTCCAACTGCAACAACT 35971
Query 517628 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA--AGAAGTT 517685
||||| |||||||| ||| ||| |||||||| | || || |||||| || ||
Sbjct 35970 TCATCGGGATTAACTGTTAAATTAGGTTTTTTA--AATGTTAATTTTTGAACTAGCTCTT 35913
Query 517686 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736
| | | ||| |||||||| || ||||||||||| | | ||||| ||
Sbjct 35912 GGATAGC---AGGGATACGAGAAGAACCTCCAACTAAAATCACTTCATTCA 35865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780532054106806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |