Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq225 147 3e-30 seq4332 95.1 2e-14 seq3842 91.5 2e-13 >seq225 Length=49998 Score = 147 bits (162), Expect = 3e-30 Identities = 330/493 (67%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 11280 ATCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACC 11339 |||||| | ||| || | |||||| || ||| | ||||| | |||||||| || | Sbjct 14808 ATCAAAACGACCCGGTCTTAATAAAGCTGAGTCTAAAATATCTACGCGGTTTGTAGCTGC 14867 Query 11340 TATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAAT 11399 || |||| || || | | | | || || || |||||||| ||||| | || || | Sbjct 14868 AATTACAATAACACCATTATTAGTTTCAAATCCGTCCATTTCGGTTAAGAGCTGATTTAA 14927 Query 11400 TGTTTGTTCACGCTCATCGTTTGCCGCAAACCCATTCATA-CTTCTTTTCTTACCAATCG 11458 |||||||| || || || || || | | | | || | | ||||| |||||| | Sbjct 14928 CGTTTGTTCGCGTTCGTCATTC-CCACCACCAACTCCAGAGCCTCTTTGTCTACCAACTG 14986 Query 11459 CATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATAT 11518 | ||||||||||| || ||||||||||| ||| ||| | || | ||| | || Sbjct 14987 CGTCAATTTCATCAATGAAGATAATACAAGGTGTTTTTGCTTTAGCTCGCTTAAAAAGAT 15046 Query 11519 CACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACACT 11578 |||| | |||| ||| |||| || ||||| | || || || ||| | || || Sbjct 15047 CACGAATTCTTGATGCTCCTATACCAACAAATAACTCTACAAATTCTGATGCGGAGCAAC 15106 Query 11579 GAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTAC 11638 || ||| ||||| | ||||| || ||||| ||||| | |||||||| || | Sbjct 15107 TAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCTTAGCTAATAAAGTTTTACCCGTTC 15166 Query 11639 CTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCAAAGTACTTTT 11698 |||| |||| |||||| |||| |||| ||||||||||| || | || || Sbjct 15167 CTGGAGGGCCTGATAATAAAACACCTTTTGGGATTTTAGCACCAACACGAGTATAACGTT 15226 Query 11699 CTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATACCCT 11758 | || ||| | |||| ||||||||||| | ||| ||||| | ||| ||||| Sbjct 15227 CGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAACTCTTCTTTAACTTCATCAATACCAG 15286 Query 11759 GAACATCATCAAA 11771 |||||||||||| Sbjct 15287 CAACATCATCAAA 15299 Score = 134 bits (148), Expect = 2e-26 Identities = 196/273 (72%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| || ||||| || || |||| || || || ||| |||||||| | | Sbjct 35553 GAGTCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCAAATACA 35494 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || || ||| | ||| | ||||||||||| ||||||||||| | ||||| || | | Sbjct 35493 CCATCTCCAACTTCTAAAATTGAAACATCAAATGTACCACCACCTAAATCAAAGATTAAT 35434 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | |||| || | |||| || | | | ||| || || | || || || |||||| Sbjct 35433 A---TCGTTTCATTTGCTTTTTTGT---CTAAACCATAAGCAAGTGCTGCTGCTGTTGGT 35380 Query 7634 TCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 |||||||||||||| | | | ||| | || ||||| | | || |||||||||||||| Sbjct 35379 TCATTAATAATACGTAAA-ACTTCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTG 35321 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| || ||||||||||| || || || || || Sbjct 35320 TCGCTGAGAATCGTTAAAATATGCAGGCACTGT 35288 >seq4332 Length=45634 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 183337 CGCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAAT 183396 ||||||||| || ||||||| | |||||||| || |||| ||| ||| || ||| Sbjct 28375 CGCGTCTTTCCCCCCCATGATCCTGGTACCAAACTGCCCACTTGGGAAGAGATAACCAAT 28316 Query 183397 ATTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTC 183456 ||||||||||||| |||||| || || | | |||||| || | || || | || Sbjct 28315 ATTATTCGACCCCACAAAATTTTGAGCCATTCCTACAATCGTCCCGTTTAAGGACGCCTC 28256 Query 183457 ACCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516 || |||||||| | | | ||| || || ||| | || | ||||| || || || || Sbjct 28255 CCCATGGTGATAGGCGGAATGTTCAGACACATATCCAGCGAGCTGCGCGACTTTGATCTC 28196 Query 183517 AGATGT-AAGATTCTTTGTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAAC 183575 | | ||| | | || | || |||||| | | |||||| || |||| || ||||||| Sbjct 28195 CTTTTTCAAGCTCCGTT-TAAAGCACGCGAACAGCACTTTCCGCTGGGCCGGCTTTAAAC 28137 Query 183576 CATC 183579 | || Sbjct 28136 CGTC 28133 >seq3842 Length=9609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-CGTCTTTGTT 7596 |||||||| ||||| || |||||||| || | | | |||| || | | |||| Sbjct 4408 ACATCAAAGGTACCCCCTCCCAGGTCGAACACCAAGATGTTCTGCTCCTTCCCCTTT--- 4464 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 || ||||||||||| || || || || ||||| || || || |||||||| | | Sbjct 4465 -TTGTCGAGACCGTATGCAATGGCAGCGGCCGTCGGCTCGTTGATAATACGCTGCACGGA 4523 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || | ||| || | ||||| ||||| || ||||| || | ||| || |||||||| Sbjct 4524 CATCCCCGAAATCGTACCGGCATCCTTCGTTGCCTGTCGCTGAGCATCATTGAAGTAGGC 4583 Query 7717 CGGGACCGTTACGACCGCGT 7736 || || || ||||| |||| Sbjct 4584 GGGCACGGTGACGACAGCGT 4603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635086347974840