Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3524 224 1e-53 seq1952 140 4e-28 seq4035 116 5e-21 seq225 109 7e-19 >seq3524 Length=35516 Score = 224 bits (248), Expect = 1e-53 Identities = 619/938 (66%), Gaps = 23/938 (2%) Strand=Plus/Minus Query 111529 GAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGA 111587 |||||| ||||| || ||||| ||| ||||||| || ||||| |||||| | |||| Sbjct 12044 GAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCCTACCTGCTCAAGA 11985 Query 111588 CTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATC 111647 |||| || || | ||||| || ||| ||||| ||||||| || || || || ||| Sbjct 11984 -TGGACGGCATCGTCATGGAGCGACCCCAGCACATGATCATGCGCGTAGCCATTGGAATC 11926 Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTC 111707 ||| ||| || | || | | | ||||| ||| | ||||||| | ||| Sbjct 11925 CATAAGGAGGACGTGGACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTCTTC 11866 Query 111708 ATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGT 111767 | ||||| || || || ||||||||||| || || || | || || | ||| || Sbjct 11865 ACTCACGCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGC 11806 Query 111768 TTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGT 111827 |||||| | | | |||||||| || ||| | || || || | |||||||| ||||| Sbjct 11805 TTCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAATGT 11746 Query 111828 GCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAAC 111887 || ||||| |||| || ||||| || || | |||||| | || | || | Sbjct 11745 GCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAACATCCGGGC--GC 11688 Query 111888 AAGTCTCGT--ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 111945 | ||||| || | || |||| || || | || || | || ||||| || | Sbjct 11687 GTGACTCGTACATCCGTGGCTCAAACGGGACCTCCAACGGCATCGTGCCCATGCTGCGTG 11628 Query 111946 TATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATCTATCG 112002 | || |||| ||| || ||||| || |||| | |||| | |||||||| ||| ||| Sbjct 11627 TCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTTCG 11568 Query 112003 CAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACC 112062 | |||| || ||||| |||||||| |||||| | |||||||| || |||| |||| Sbjct 11567 CCATCTACCTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAACC 11508 Query 112063 AAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCT 112122 | || ||||| || |||| |||||| | |||| ||| ||||||| || ||||| | Sbjct 11507 ACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTGT 11448 Query 112123 TCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCG 112182 ||||| || | || ||| | ||| | |||||||| || || || || || || | Sbjct 11447 TCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAACGAGTGCCCTG 11388 Query 112183 GTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGC-CCTCTACACAAAGTACGAGGAAGA- 112240 | || | || | || ||||| ||| |||| || || | |||||| ||||| Sbjct 11387 GCCTGGCGGACGTATGTGGAGAGGAATTT-AAGCAGCTGTATGAGACGTACGA-GAAGAG 11330 Query 112241 ----AAGTCGGGCGA-CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAG 112295 ||| || || | || | ||||| || ||||| || | | | Sbjct 11329 TGGCAAGGCGCGCAAGGTGATCAAGGCCCAGCAGC-----TGTGGTTTGCGGTGTTGGAC 11275 Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 || || ||||| || || || |||||||| | ||| || ||||| || | ||| Sbjct 11274 TCACAGGTGGAGACGGGCACGCCCTATATGCTCTTCAAGGATGCCTGCAATCTCAAGTCG 11215 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 || || ||||| |||| || |||||| ||||||||| || || || ||| | || | | Sbjct 11214 AACCAGCAGAATCTGGGAGTTATCAAGTCTTCCAACCTGTGCACGGAGATCATCGAGTAT 11155 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 112453 || | |||||| || || || ||||| || || Sbjct 11154 ACGGCGCCCGATGAGGTTGCCGTCTGCAACCTTGCCTC 11117 >seq1952 Length=85402 Score = 140 bits (154), Expect = 4e-28 Identities = 281/413 (68%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || ||||| || || ||||| || | ||| |||| || | | || || ||| Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||||||| | || || | | | || || || |||||||| |||| |||||| || Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 | ||||| || || || || || ||| |||| | |||||||| || || |||| Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTCA 16118 | || |||||||| || ||||| | |||||| | ||| | || || || ||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC----TCA 26781 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---CG 16175 || | || || |||||| || |||||||| |||||||| ||||| || | | | Sbjct 26782 AACATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCA 26841 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | || |||||||| || ||| |||||||| | ||| ||| || || ||| Sbjct 26842 GCCGCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTC 26898 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || ||||| || ||| | |||| |||| || || |||||||| || Sbjct 26899 TTCCCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 >seq4035 Length=10978 Score = 116 bits (128), Expect = 5e-21 Identities = 309/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 ||||||| ||||| ||||||||| | ||| | ||||| || | ||||| || | | Sbjct 7636 TTGAGCCTTGGCATGCGGATATCTTCGAGGTGCTTGACTTAAGGAAGAACCATGGGAAGG 7577 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 | || || ||| ||||| ||||| | || || |||||||| ||| | || ||||||| Sbjct 7576 AAGAAGCCCGGGCGCGCGACCTCTTTTACGGGCTTTGGATTCCCGATTTGTTTATGAAGA 7517 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 |||| ||||| ||| | |||||| || | ||||| || || || || | || Sbjct 7516 GAGTGGAGGAAGATGGGATTTGGTCACTGATGTGTCCTGATCAGTGTCCTGGCTTGGGCG 7457 Query 112192 A-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCG 112250 | || | | || | |||||||| | ||| || | |||| | |||| ||| Sbjct 7456 ACTGTCAT-GGCAAAGAGTTTGAGGTCCTGTATCTGCAATACG----AAAAAGCTGGGAA 7402 Query 112251 ACT----GCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGA 112306 | | ||| |||| || || ||||| || || || | || || | ||| Sbjct 7401 AGTAAAAAAGACAGTGCGTGCGCAAGACCTGTGGTTCGCCATCCTGGACTCACAGATCGA 7342 Query 112307 GACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 || || || || |||||||| | ||||||||| ||||| | ||||| ||||| | || Sbjct 7341 AACGGGCACGCCTTATATGCTCTTCAAAGACGCGTGTAATCTTAAGAGCAATCAGCAAAA 7282 Query 112367 TTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 112426 ||| || ||| || || ||| | || || || || | | | ||| | || Sbjct 7281 TTTAGGGACGATTCGAAGCTCGAACTTGTGCACGGAGATTATCCAGTATACGAGCCCCGA 7222 Query 112427 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| ||||||||||||| | || || |||| ||| ||||| | |||| Sbjct 7221 GGAGGTGGCTGTGTGTAACTTGGCCTCGATCGTTCTGCCCAAATTTGTG 7173 >seq225 Length=49998 Score = 109 bits (120), Expect = 7e-19 Identities = 298/452 (66%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 15924 ATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAAACCATC 15982 ||||| ||||| || || || || || |||| || ||| | || ||| ||||| || || Sbjct 14845 ATATCTACGCGGTTTGTAGCTGCAATTACAATAACACCATTATTAGTT-TCAAATCCGTC 14903 Query 15983 CATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC 16042 ||| || || || ||||| || | |||||||| ||||| |||||| | | | || Sbjct 14904 CATTTCGGTTAAGAGCTGATTTAACGTTTGTTCGCGTTCGTCATTCCCACCACCAACTCC 14963 Query 16043 AGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT 16102 || | | ||| | || || || ||||| ||||||||||||| || || ||| || Sbjct 14964 AGAGCCTCTTTGTCTACCAACTGCGTCAATTTCATCAATGAAGATAATACAAGGTGTTTT 15023 Query 16103 TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATC 16160 | | ||| | ||| ||||| || | |||| || || | ||||||||| | | Sbjct 15024 TGCTTTAGCTCGCTTAAAAAGATCACG--AATTCTTGATGCTCCTATACCAACAAATAAC 15081 Query 16161 TCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCT 16220 || ||||| | || ||||| || | ||||| || || | ||||| ||||| || Sbjct 15082 TCTACAAATTCTGATGCGGAGCAACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCC 15141 Query 16221 CGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATC 16280 || | | ||| |||||||| ||||| || | | | ||||| ||| || Sbjct 15142 TTAGCTAATAAAGTTTTACCCGTTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGATT 15201 Query 16281 TTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAAT 16340 || || ||| | | || | || |||| ||| | |||| ||||| |||| || Sbjct 15202 TTAGCACCAACACGAGTATAACGTTCGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAAC 15261 Query 16341 TCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || ||||| | | ||||| || ||||||| Sbjct 15262 TCTTCTTTAACTTCATCAATACCAGCAACATC 15293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620697000452720