Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3524 199 5e-46 seq1952 168 8e-37 seq225 100 3e-16 >seq3524 Length=35516 Score = 199 bits (220), Expect = 5e-46 Identities = 1168/1855 (63%), Gaps = 65/1855 (4%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| || || ||||| || || ||||| || |||||| | || | ||||| || | Sbjct 10219 GCGCAGGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGAATAAAAGTGCATGGAGGT 10278 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCA--TAAACAAGTTCATCGACTGAGACTGATCGATG 109524 ||| | || | || ||| | ||| | || | || | ||||| || || ||| Sbjct 10279 GAGCTGGGCGGGCGTGGGATTGGCCAGGTGAATA--TTGAGGGACTGGGATTGGCAAATG 10336 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 | || || || |||||||||||||||| ||||| || | || ||||| || ||| Sbjct 10337 TAGGCCCCGCGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTC 10396 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 || || | | |||| ||| ||| ||| | | ||| || | ||||| | | Sbjct 10397 TTATATAGCTCTTTGAGCTCACGGGGGATGCTTGCTACGTTCTGCACCGAGCCGCGA--- 10453 Query 109645 TTCACCATGAGATCCTTC---ATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701 || |||||| | || | ||| ||| || ||| || | || ||| | Sbjct 10454 TTACCCATGATCTGGTTGCGGACCTCGGCATTCCAAAGGCCGCGCTCGATCAGGTCGCCG 10513 Query 109702 ACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 | || | ||||||||| | | |||||| || || || ||| || || ||||| Sbjct 10514 AGCAGGTACTTGTTGACGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTG 10573 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | |||| |||| || | |||| |||||||| |||||||| || ||||| || |||||| Sbjct 10574 GACGTGAAGGGCTCCACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGC 10633 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 ||||| |||| || || || || | || | | || || | |||| || Sbjct 10634 ATGGGCGCCAGCAGCAGGGAATTGCGCACGCCATGCTCCTGGACTTTGACGCGCAGGCCG 10693 Query 109882 TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 ||||||| | || | | ||| | || |||||| || || | || Sbjct 10694 GCCCAATCCCAGCGCG---TGGAGGGGGTCACGCC---CCACATGTCGAACTGGAAGACG 10747 Query 109942 CCCTCAGCAGCAGGA-GAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| || | || ||||| ||| ||||||||| ||||| | || | || Sbjct 10748 CCCTT-GCTGATGGGCGAACCGGAGAAGGTCTCGTACGGGCCCTCCTTCATTGCGATTTC 10806 Query 110001 GGATGAAGCCTCTA--GTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 || || || | | |||| | ||||| ||||| || | | ||||| || Sbjct 10807 CATGGAGGCTTCGACGGCGCCGAAG--TACATGGTCTCGAAGACGTCCTTATTCAGCTGG 10864 Query 110059 CGAGACTCTTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTG 110117 | | ||| | | |||||||| || || || | ||| ||||||| | ||||| Sbjct 10865 AGCGCGTCTGCCGACTCGAAGGGGTAGCGCATTTTGA-TGAACGCATCCGCCAAGCCCTG 10923 Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTA 110177 || |||| || | ||| | |||| |||||| ||||| ||| ||| |||||||| Sbjct 10924 CACGCCGATGCCGACGGGCCTATGCCGCATGTTGGAGCGCTTAGCCTCTTCCACGGGGTA 10983 Query 110178 AAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAG 110237 ||||||| |||||| || || ||||| || |||||| ||| ||||| || | ||| Sbjct 10984 AAAGTTGATGTCGATAACACGGTTGAGGTTGCGCGTCACCACCTTGGTGATCTCGTAGAG 11043 Query 110238 ------TTTGTCGTAATCGAACGTTTT-CGTCTCCTTATTGA---------CATATTTGG 110281 | ||| ||| | | ||| | || | ||| || | Sbjct 11044 GCGCTGTAGGTCATAAGAGGGGGCTTTACCGCTGCCAGTTGGTTCCTCCCGCACGAACGC 11103 Query 110282 GGAGAGCA--ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||||| | ||| ||||| ||||| || | | ||| || | || || || | Sbjct 11104 CGAGAGGTTGACAGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGAT 11163 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 || ||||| |||| ||||||| ||| || || |||| |||| ||| ||||| ||| Sbjct 11164 GATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAG 11223 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 ||||| |||||||| ||||||| || || || || || ||| |||||| | | | Sbjct 11224 ATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACAC 11283 Query 110460 GGCCTTCCATACATCGGCGGCGGGGACAGTTG----CGTTAGCGAGACCTTCCTC----C 110511 || ||| | || || ||| | ||| | || ||| | | | || | | Sbjct 11284 CGCAAACCACA-----GCTGCTGGGCC--TTGATCACCTT-GCGCGCCTTGCCACTCTTC 11335 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 |||||| | |||| | || |||||||| ||| | || || | || || | Sbjct 11336 TCGTACGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCAC 11395 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | || ||| ||||| || ||||| | || | | ||| || | || ||||||||| ||| Sbjct 11396 TCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCA 11455 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 || |||| | || |||| | ||| ||| || || |||| || ||||| | Sbjct 11456 GGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTG 11515 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751 || || |||| || || | |||||| | |||||| || || || |||| |||| || Sbjct 11516 CGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAG 11575 Query 110752 CCCTTACGACGACCCGC---CTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 ||||| || ||| | ||||| || ||||| || ||| | |||||||| | ||| Sbjct 11576 CCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGC 11635 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868 || || | || || | ||| || |||| || | || || | | || || Sbjct 11636 ATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGG 11695 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTG 110928 |||| ||||| | |||||| ||||| || |||| || ||||| | || Sbjct 11696 ATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTG 11755 Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 || || |||| ||||| || || || || |||| ||| | || ||||| || || Sbjct 11756 AGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAG 11815 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | ||| || || ||||| || || |||||||||||||| || || ||| |||| || Sbjct 11816 AGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTC 11875 Query 111049 TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATG 111108 |||||||| ||||| || || | || | | || || | || || |||||| Sbjct 11876 TGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATG 11935 Query 111109 GCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGA--A 111166 || || ||||||| ||| | || || || || | | || || || ||| | Sbjct 11936 GCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTC--CATCTTGAGCA 11993 Query 111167 GGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 |||| |||||| || ||||||| ||| || || || | ||||| || ||||| Sbjct 11994 GGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTCTCGATC 12048 >seq1952 Length=85402 Score = 168 bits (186), Expect = 8e-37 Identities = 325/472 (69%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| ||||| || || || ||||| | ||| || | ||| | | ||| || ||| Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | ||||| | | ||||| |||||||| || || |||||||| || Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACCACCTGCCGAACGCTTCTTACCGA 11680 | || || |||||||| ||||| | |||| | ||| || ||||| ||| | Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 ||||||||||||| |||||||| | ||| || || ||| ||||| || || | Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGCTCAAACA 26785 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800 ||||| |||||| ||| || ||||| || ||||| || ||||| | | ||| | Sbjct 26786 TGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCAGC-C 26844 Query 11801 ACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | || |||||||| || ||||||||| || | ||| || || || ||||| || Sbjct 26845 GCCGATATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTCTTCCCT 26904 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGTA 11918 ||||| || | |||| | || | | || ||||||||||||||||| || | ||| Sbjct 26905 GTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACCGACGT-TGGTGTA 26963 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 ||| || ||||| | ||||| || | |||| || ||| ||||||| Sbjct 26964 CTTCTCCGGGTTCTTCAAAAAGTCAACCACCTCCGTCAGCTCCATCTTGGCG 27015 >seq225 Length=49998 Score = 100 bits (110), Expect = 3e-16 Identities = 244/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||| |||||||| || | | || ||| || | |||||| || ||||||||||| || Sbjct 14808 ATCAAAACGACCCGGTCTTAATAAAGCTGAGTCTAAAATATCTACGCGGTTTGTAGCTGC 14867 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | || ||| | | | | || || ||||||||||| || | ||||| || | Sbjct 14868 AATTACAATAACACCATTATTAGTTTCAAATCCGTCCATTTCGGTTAAGAGCTGATTTAA 14927 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC-CGAACGCTTCT-----TACC 11678 ||| ||||| || || || || | |||||| | | | || ||| |||| Sbjct 14928 CGTTTGTTCGCGTTCGTCATT------CCCACCACCAACTCCAGAGCCTCTTTGTCTACC 14981 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || |||||||| ||||| ||||| | ||||| ||| || || || | | || Sbjct 14982 AACTGCGTCAATTTCATCAATGAAGATAATACAAGGTGTTTTTGCTTTAGCTCGCTTAAA 15041 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 ||| ||||| | | ||||| | ||| || || | ||| || || | || || || Sbjct 15042 AAGATCACGAATTCTTGATGCTCCTATACCAACAAATAACTCTACAAATTCTGATGCGGA 15101 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || |||||||| || | |||||| || || || ||| | | ||| ||||| Sbjct 15102 GCAACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCTTAGCTAATAAAGTTTTACC 15161 Query 11859 CGTACCAGG 11867 ||| || || Sbjct 15162 CGTTCCTGG 15170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588932923767800