Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3524 233 2e-56 seq225 116 4e-21 seq1952 113 5e-20 seq2878 93.3 5e-14 >seq3524 Length=35516 Score = 233 bits (258), Expect = 2e-56 Identities = 601/903 (67%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 || ||||| | || || || |||| ||||||| ||| || |||| ||||| ||| Sbjct 11153 GTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGG 11212 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| ||||| ||||||||| ||||||| |||||||| ||||||||| |||| Sbjct 11213 TTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGT 11272 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACA--ATGGCGTTG-GC-CCGTCC 106680 || | | | || ||||| || ||||| | || | ||| || || | | Sbjct 11273 GAGTCCAACACCGCAAACCACA-----GCTGCTGGGCCTTGATCACCTTGCGCGCCTTGC 11327 Query 106681 CTC-CGCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 106738 | | | ||||||| | || || |||| ||| ||||| || |||| | || Sbjct 11328 CACTCTTCTCGTACGTCTCATACAGCTGCTT-AAATTCCTCTCCACATACGTCCGCCAGG 11386 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || || || || ||||| |||||||| | || | | ||| || |||| |||| Sbjct 11387 CCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATG 11446 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || || || |||| |||| | || | || | ||| || || | || Sbjct 11447 AACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATTGCCG 11506 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||||| || | || |||||||| | |||||| |||||||| ||||| || |||| Sbjct 11507 TGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATG 11566 Query 106919 GCGATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 106975 |||| ||| ||||| || | |||| | || | || ||||| || ||| |||| || Sbjct 11567 GCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAG 11626 Query 106976 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATT 107033 || || ||||| || | || || | || || |||| || || || ||||| | Sbjct 11627 ACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAG--T 11684 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 | || | | | |||||| | ||||| || || || |||| ||||| || Sbjct 11685 CACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCG 11744 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 |||| | | | ||||| |||||||||||| ||| ||||||||||| ||| | ||||| Sbjct 11745 CACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGA 11804 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 |||| ||| | |||||| | || || || || |||||||| || || || |||||| Sbjct 11805 AGCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAG 11864 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 |||| | |||||||| | ||| ||||| | | | || | ||| ||| | Sbjct 11865 TGAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTAT 11924 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGA 107333 |||| || ||||| || ||||| | ||||| |||||| ||||||| |||||| || | Sbjct 11925 GGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCA 11984 Query 107334 GCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | |||| || ||| |||||| || || |||| ||| || || || | || |||| Sbjct 11985 TC--TTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTC 12042 Query 107392 CCG 107394 || Sbjct 12043 TCG 12045 >seq225 Length=49998 Score = 116 bits (128), Expect = 4e-21 Identities = 299/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9290 ||||| ||||| || || || || || |||| || ||| | | | | ||||| || ||| Sbjct 14845 ATATCTACGCGGTTTGTAGCTGCAATTACAATAACACCATTATTAGTTTCAAATCCGTCC 14904 Query 9291 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA 9350 || || || || || || || | |||||||| ||||| |||||| | | | ||| Sbjct 14905 ATTTCGGTTAAGAGCTGATTTAACGTTTGTTCGCGTTCGTCATTCCCACCACCAACTCCA 14964 Query 9351 GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT 9410 | | | ||| | || || || ||||| ||||||||||||| |||||| ||| ||| Sbjct 14965 GAGCCTCTTTGTCTACCAACTGCGTCAATTTCATCAATGAAGATAATACAAGGT--GTTT 15022 Query 9411 TCGC----GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACAT 9466 | || | || || ||| ||||| |||| ||| || || | ||||||||| | Sbjct 15023 TTGCTTTAGCTCGCTT--AAAAAGATCACGAATTCTTGATGCTCCTATACCAACAAATAA 15080 Query 9467 CTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGC 9526 ||| ||||| | || ||||| || | ||||| || || | ||||| ||||| || Sbjct 15081 CTCTACAAATTCTGATGCGGAGCAACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGC 15140 Query 9527 TCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT 9586 || | | ||| |||||||| ||||| || | | | |||| ||| || Sbjct 15141 CTTAGCTAATAAAGTTTTACCCGTTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGAT 15200 Query 9587 CTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAA 9646 || || ||| | | || | || |||| ||| | |||| ||||| |||| || Sbjct 15201 TTTAGCACCAACACGAGTATAACGTTCGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAA 15260 Query 9647 TTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || ||||| | | ||||| || ||||||| Sbjct 15261 CTCTTCTTTAACTTCATCAATACCAGCAACATC 15293 >seq1952 Length=85402 Score = 113 bits (124), Expect = 5e-20 Identities = 275/413 (67%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || ||||| ||||| ||||| || | ||| |||| || | | || || ||| Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||||||| | || || | | || || || |||||||| |||| ||| || || Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | ||||| || || || || || ||| |||| | |||||||| || || |||| Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGATTTCA 9425 | || |||||||| || ||||| | || || | ||| | || || || ||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC----TCA 26781 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---CG 9482 || | || || || | || |||||||| |||||||| ||||| || | | | Sbjct 26782 AACATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCA 26841 Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 || | || |||||||| || ||| |||||||| | ||| ||| || || ||| Sbjct 26842 GCCGCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTC 26898 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || ||||| || ||| | |||| |||| || || |||||||| || Sbjct 26899 TTCCCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 >seq2878 Length=6153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||| |||||||| ||| | || | |||||| ||||| ||| || ||| Sbjct 6125 GGCATCAAACCCCTCTTCTTCAGCCAGAATATCGAGCAGAACGACCCACTGAAAAATATA 6066 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || |||||| ||||||||||| |||||||||||||| ||| |||| ||| || Sbjct 6065 CCTTCCACAGCCGCAAACGCAATCAGGCGCTCGGCGAAAGAGGCGTACTTCCGGTCGCAC 6006 Query 117454 CATTTCATTGCCCATTTCGCCTTC 117477 || | | ||||| | ||||||| Sbjct 6005 CACCTGAGGGCCCACTGCGCCTTC 5982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589937650279240