Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq5733 737 0.0 seq225 533 2e-146 >seq5733 Length=57551 Score = 737 bits (816), Expect = 0.0 Identities = 768/1002 (77%), Gaps = 8/1002 (1%) Strand=Plus/Minus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || ||||||||||||| ||| | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 179835 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 179894 | |||||||||| |||| |||||||| || || || || || |||||||| ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 179895 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 179954 || || ||||| ||||| | || || |||||||| ||| | ||||||||| ||||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 179955 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGG 180014 || ||||| |||||| |||||||||| || | |||||||| || || | ||||||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 180015 CTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCC 180074 || || ||||||||||||| ||||||||| || || |||||| | | || | | | Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 41530 Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTA 180134 |||||||| ||||| ||||||||| || || || || ||||| || ||||| | |||| Sbjct 41529 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 41470 Query 180135 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 180194 || | || |||||||| |||||||||||||| |||||| | || || || | || ||| Sbjct 41469 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAA 41410 Query 180195 GGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTT 180254 ||| |||||||| | ||||| | || |||||||| || ||||||| |||| | || Sbjct 41409 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 41350 Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTC 180314 ||||||||||| |||||||| || |||||||| ||||| ||| || || || ||||| Sbjct 41349 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 41290 Query 180315 TTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGT 180374 || || || || | ||| || ||||||||||| || || || ||| | | ||| Sbjct 41289 TTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 41230 Query 180375 GAAACCACTGAA-ACTGAGTCCCAG--AACTACGGTTACAAGTTTGGTCAAGAAGAAGAG 180431 ||| |||||| || | || | | |||||||||||||| || || ||||||||||| Sbjct 41229 GAA---ACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 41173 Query 180432 ACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCG 180491 || ||||||||||| |||||||| || ||||| || ||| | |||||||| || || Sbjct 41172 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 41113 Query 180492 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGG 180551 ||||||||||| ||| | | ||||||||| | || |||||||| || || || |||||| Sbjct 41112 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGG 41053 Query 180552 TTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 180611 || ||||| || || || || || |||||||| ||| | |||||||||||||||||||| Sbjct 41052 TTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAA 40993 Query 180612 TCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCT 180671 || | ||||| |||||||||||||| ||||||||||||| ||| | ||||||| ||| Sbjct 40992 TCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 40933 Query 180672 GGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCA 180731 | | | ||||||||||| |||||||| ||||| || ||||||||||| || || | || Sbjct 40932 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCC 40873 Query 180732 GCTGCTGA-GTCCACTCCTGTTGCACTCACCGCTCCTTCTGT 180772 | || | || | ||| |||||| | | ||||||| |||| Sbjct 40872 GTATCTAATGTTC-TTCCAGTTGCATTAAACGCTCCTGCTGT 40832 >seq225 Length=49998 Score = 533 bits (590), Expect = 2e-146 Identities = 734/1019 (72%), Gaps = 12/1019 (1%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 |||||| | | ||||||||| | ||||| || || || || ||| | || ||||| || Sbjct 37823 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGC 37882 Query 181484 CTACTTCTTTTTCCCA-CTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTT 181542 || || || |||||| | || | ||||||| |||| || ||| | || || || ||||| Sbjct 37883 CTT-TTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 37941 Query 181543 TGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCT 181602 |||||| || ||||| || || ||||| || ||||| || | || || ||| ||| | Sbjct 37942 TGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTT 38001 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || | || || ||||| || || || ||||||||| || | || || | ||||| Sbjct 38002 AACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGG 38061 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 |||||||| || || |||||| || ||| | ||| |||| ||| | ||||||||| | Sbjct 38062 ACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTAT 38121 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCA-GGCAATTTGAACTTGCTC 181781 || || ||||| || || | | | || || || || | | | ||||| || | |||| Sbjct 38122 AGCACTACACGGTGCATTTGGTTTAATTGG-ATTCTGTTTACGTCAATTCGAGATCGCTC 38180 Query 181782 GTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 |||| | || || || || ||||| || ||||| || || || |||||||| ||||| | Sbjct 38181 GTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTG 38240 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| | || |||||||| |||||| | ||||||||||| || || ||||| | Sbjct 38241 TTTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTG 38300 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 | || || || |||||||| || | | ||| | || || || ||||| ||||| || | Sbjct 38301 GGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 38360 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 |||| ||||||||||||||||| || || || | || || |||||| | |||||||||| Sbjct 38361 ATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTC 38420 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | || | || || || ||||| || | | |||| ||||| ||||| || ||| | Sbjct 38421 ATGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTG 38480 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || |||| ||| ||||||||| ||||| ||||| |||||||| | ||||||| Sbjct 38481 CGTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGT 38540 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 |||| || || ||| | || || || || | ||| | |||||||| ||| | |||| Sbjct 38541 CTCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38600 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 ||||||| | ||| | ||||||||||| | |||||| ||||| | || | || | Sbjct 38601 TTCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAA 38660 Query 182262 GTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGT 182321 | || || || || ||||| ||||| | | || | ||||| ||||| || || || | Sbjct 38661 GAGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTT 38720 Query 182322 TCTACACAAAGAACATTCTCTTGAATGAAGGTCT----GCGTGCATGGTTAGCACCAGTC 182377 ||||||| || || || | || ||||||||| | |||| |||| | |||| | Sbjct 38721 TCTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCACAA--- 38776 Query 182378 GATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||||||||| || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 38777 GACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610352157104040