Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5733 650 0.0 seq225 567 8e-157 >seq5733 Length=57551 Score = 650 bits (720), Expect = 0.0 Identities = 711/942 (75%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 |||||||| |||||| ||||||| ||| ||| | ||||| || || |||||| | Sbjct 41814 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 41755 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 41754 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 41695 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | || || || |||||||| ||| | ||||||||| |||| || |||||||| || Sbjct 41694 CTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGT 41635 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | |||||||||||| | |||||||| || |||| || || ||| | || || |||||| Sbjct 41634 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGT 41575 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACA 169742 ||||| || | ||| | || |||||| ||||| ||| | | ||||||||| | | Sbjct 41574 CCTTACCAACTTGTAGTATTACACTTC-TTATTAGGTGTAGCTTGCTACATGGGACGTGA 41516 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 |||||||| ||| | ||||| |||||||||||||| | || || | ||| || || Sbjct 41515 ATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCC 41456 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 |||| |||| |||| || ||||||||||| |||||| |||| || ||| |||||||| Sbjct 41455 AGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGA 41396 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||||| || |||||||||||||| ||||| || ||||||||||| || Sbjct 41395 TGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACA 41336 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 |||||||| ||||| || ||||| ||||| || || || || |||| || |||||||| Sbjct 41335 CAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTT 41276 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||| ||||| ||||| || || | ||||| | ||||| ||| Sbjct 41275 ATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGG 41216 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 | || ||||| ||||| || |||||||||||||||||||| |||||||| ||||| Sbjct 41215 CGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGC 41156 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 ||||||||||||||||| ||| | |||||||| || || |||||||||||| | Sbjct 41155 TGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGC 41096 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| |||| | | || |||||| || | |||||||| || | ||| | Sbjct 41095 TTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGT 41036 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAA 170282 | || |||||||| ||||| || ||||||||||| |||||||||||||||||| | | Sbjct 41035 TAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCA 40976 Query 170283 CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGT 170342 || | || || |||| ||| || | ||| | || | || ||||||||||| Sbjct 40975 AGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGT 40916 Query 170343 TATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 ||||| ||| | || || ||||||||||| ||||| |||| Sbjct 40915 AATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 40874 >seq225 Length=49998 Score = 567 bits (628), Expect = 8e-157 Identities = 760/1051 (72%), Gaps = 27/1051 (3%) Strand=Plus/Plus Query 170519 AAGGGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGG 170578 ||| |||| ||||| | | || ||||||||||| |||||||||| || || || || Sbjct 37813 AAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGG 37872 Query 170579 ATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGG 170638 ||||| || |||||| | | || |||| || || | ||||| ||||| ||| Sbjct 37873 TTGGTCAGGCCTTTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 37932 Query 170639 GACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATG 170698 || || || |||||||| |||||||| ||||| | || || || ||| | || ||||| Sbjct 37933 TACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATG 37992 Query 170699 TAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 170758 ||||||| |||| | |||||| || ||||| | || |||||||| | | || Sbjct 37993 TAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTT 38052 Query 170759 CCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATG 170818 | |||||||||||||| ||||| || ||||||| | ||| | || || ||||| Sbjct 38053 ATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATG 38112 Query 170819 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTG 170877 | ||| ||||| |||| || | ||||| | || || ||| || | | | ||||| | Sbjct 38113 GGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCG 38171 Query 170878 AGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCG 170937 ||||||| | |||||||| || | || ||||||||| | |||||||||| ||| | Sbjct 38172 AGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTG 38231 Query 170938 CAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCA-GCACAGTTGGTTCTTCGCA 170996 | || || | | || | || ||||| ||||| || ||| |||||||||||||| Sbjct 38232 CGGTATTTGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCA-AGTTGGTTCTTCGCT 38290 Query 170997 CCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAAC 171056 ||| || || || ||||| ||||| || | | | |||||| ||||||||||||| ||| Sbjct 38291 CCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAAC 38350 Query 171057 ATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTA 171116 ||| | |||||||| || ||||||||||| ||||| || |||| || ||||||||| Sbjct 38351 TGGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTA 38410 Query 171117 TGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACT 171176 | ||| |||||||| || ||||| | || ||| | | |||||| | | || || Sbjct 38411 TCTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGA------TGGTGATGCT 38464 Query 171177 GATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACT 171236 | |||| ||||||||||| ||| || ||||| |||||||||| Sbjct 38465 G-----------CAAA----CACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACT 38509 Query 171237 TACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAAC 171296 || ||| | ||||| || ||||||||||| || || |||||| | |||||||| ||| Sbjct 38510 TATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCTCGAAC 38569 Query 171297 AAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCT 171356 ||| | | | || ||| | ||||| || |||||||| | ||| | |||||| ||| Sbjct 38570 AAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGGTTTATGGACAAGTTCT 38629 Query 171357 ATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATA 171416 | ||||| || ||| ||||| | || | |||||||||||||| |||||||||||| | Sbjct 38630 TTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAGAGCTT 38689 Query 171417 AGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGA 171475 | || || ||||| ||||| || || |||||||||||||| ||||| ||| || ||||| Sbjct 38690 CGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATAT-CTTATTAAATGA 38748 Query 171476 AGGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGA 171535 |||||| ||| | |||||| | || |||||||||||||| || || ||||||||||| Sbjct 38749 AGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAATTTTGTATTCCCAGA 38808 Query 171536 AGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || || |||||| | || ||||| |||||| Sbjct 38809 GGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579170437823840