Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq5733 733 0.0 seq225 576 2e-159 >seq5733 Length=57551 Score = 733 bits (812), Expect = 0.0 Identities = 740/956 (77%), Gaps = 10/956 (1%) Strand=Plus/Minus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 167950 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 168009 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 168010 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCT 168069 || || ||||| ||||| | || || |||||||| ||| | ||||||||| | ||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 168070 TCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 168129 ||||| |||||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 168130 TTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTAT--CTATG 168187 | || ||||||||||||| |||||| ||||| || |||||| | | ||| | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 168188 CATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTG 168247 | |||||||||||||||||||||||| || |||||||| |||||||| ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 168248 TTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTC 168307 | || | ||| || ||||| |||||||| |||||||||| |||| || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 168308 AAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGG 168367 ||||||| |||||||||| ||||| | || || || || || ||||||| |||||| | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 168368 TCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGG 168427 | |||||||| || ||||| ||||| ||||| || ||||||||| || |||||||| | Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 168428 TATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTA 168487 | |||||||| ||| || |||||||||||||| | | || || ||| | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 168488 GAGAGACGACTGAA-AC--CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAG 168544 | || |||||| || || ||| |||||||||||||| |||||||||||||||| Sbjct 41231 GTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 168545 AAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 168604 |||| |||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 168605 CATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 168664 ||||||||||| || | || ||||||||| | ||||||||||| ||||| || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 168665 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 168724 |||| || || ||||| || || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 168725 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCG 168784 | || | ||||| |||| ||||||||| | ||||| ||||| || || | ||||| | Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 168785 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 576 bits (638), Expect = 2e-159 Identities = 734/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 169317 TCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTC 169376 ||||||||||| | ||||| || || || || || ||||||||||| || || || || Sbjct 37833 TCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCT-TTTATTA 37891 Query 169377 TTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCC 169435 ||||| || || | |||||| |||| || ||| | || ||||| | |||||||| || Sbjct 37892 TTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 37951 Query 169436 TGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 ||||| || || ||| | || || ||| |||||||| ||||||| | |||| || Sbjct 37952 TGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCA 38011 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || ||||| || || |||||| |||||| | | || ||||||| || ||||| Sbjct 38012 GTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCG 38071 Query 169556 CAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCAT 169615 ||||| |||||| ||| ||| |||| | ||||| | ||| ||| ||||||| || Sbjct 38072 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACAC 38131 Query 169616 GGTGCATTTGCATTGATTGGTTTCATGCTTA-GGCAGTTTGAATTGGCACGTCTTATTGG 169674 |||||||||| || ||||| ||| || ||| | || || || | || |||||| | || Sbjct 38132 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 38190 Query 169675 CATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTT 169734 || ||||| || || || |||||||||||||| |||||||| |||||||| ||| || Sbjct 38191 TATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATT 38250 Query 169735 TCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGC 169794 | || || || || ||||| | |||||||| ||||| ||||| || |||| Sbjct 38251 CTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 38310 Query 169795 AATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 169854 || ||| | || | || ||| | ||||| ||||| |||||||| | ||||||||||| Sbjct 38311 TATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38370 Query 169855 CATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTAC 169914 ||||||||||||||||| || || || || ||||| | ||||| || ||||| | || Sbjct 38371 TATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCAC 38430 Query 169915 AGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTC 169974 |||||| || ||| | | |||||| ||||| ||||| || ||| |||||| | Sbjct 38431 AGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACC 38490 Query 169975 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 170034 ||||| |||||| |||||||| ||||| || || || | |||||||| || || || Sbjct 38491 AACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 38550 Query 170035 CGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 170094 ||| | || || || ||||| |||||||||||||| |||||||| ||||| ||||| | Sbjct 38551 TGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAAC 38610 Query 170095 GGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGA 170154 ||| | |||||| ||| |||| ||| |||| | || | ||| | | || ||||| Sbjct 38611 AGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGA 38670 Query 170155 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 170214 |||||| ||| ||| | | || || ||||||||||||||||| || |||||||| || Sbjct 38671 TTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 38730 Query 170215 AAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGA 170274 ||| ||| |||| |||||||| || | | ||| |||| | || ||||||||||| Sbjct 38731 AAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGA 38790 Query 170275 AAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || | |||||||| || ||| | || | || ||||| || Sbjct 38791 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574431584437080