Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq5733 767 0.0 seq225 576 2e-159 >seq5733 Length=57551 Score = 767 bits (850), Expect = 0.0 Identities = 764/983 (78%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| ||| | ||| |||| | ||||| | || | ||||||||||| ||| | Sbjct 41856 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 41797 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163904 |||||||| || | | |||| || | ||| |||||| |||| ||| |||| || || Sbjct 41796 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 41737 Query 163905 CCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAAC 163964 || || || ||||||||||| |||||||| || || || || || | || || |||||| Sbjct 41736 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 41677 Query 163965 ATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATT 164024 || ||| | ||||||||| |||| || || || |||||| ||||||||||||| || Sbjct 41676 ATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 41617 Query 164025 TGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTC 164084 |||||||| || || | || || |||||||||||||||||||||| ||||||||| || Sbjct 41616 TGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 41557 Query 164085 TTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 || |||||| | | ||| | || ||| |||||||| ||||| |||||||| |||| Sbjct 41556 TTACACTTCTTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACC 41499 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 || | || |||||||||||||||| || |||| ||| || || || || |||||||| | Sbjct 41498 GTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTG 41439 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 |||| ||| | || || || | || |||||| |||||||| | ||||| | || | Sbjct 41438 CAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTA 41379 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| |||||| || ||||||||||| |||||||| || ||||||| Sbjct 41378 TTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACC 41319 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | ||||||||| || |||||||| || ||||| || ||| | |||||||| ||||||| Sbjct 41318 CATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACG 41259 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCAG--AACT 164439 ||||||| || || ||| | | |||||| || ||| || | || | | |||| Sbjct 41258 GTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGCGTATCTGCTAACT 41202 Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499 | |||||||| || || |||||||||||||| |||||||| || || || |||||||||| Sbjct 41201 ACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACT 41142 Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||| ||| | |||||||||||||| ||||||||||| ||| | || ||||||||| Sbjct 41141 TTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCT 41082 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||||||||| ||||| || |||||||| || || ||||||||| || ||||||| Sbjct 41081 TAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCAT 41022 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679 | ||| | |||||||||||||||||||| || | | ||| |||| ||||||||| ||| Sbjct 41021 TTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCA 40962 Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739 |||||||||| ||| || ||||||| |||| | | ||||||||||| |||||||| |||| Sbjct 40961 ACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTA 40902 Query 164740 ACGCTCACAACTTCCCTCTGGAT 164762 |||| |||||||||||||| ||| Sbjct 40901 ACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 576 bits (638), Expect = 2e-159 Identities = 734/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 165204 TCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||||| | ||||||||||||||||| ||| |||||||||| || ||| || || Sbjct 37833 TCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTA 37891 Query 165264 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGT 165322 ||||| || || | |||||| |||| || ||| | || || || ||||| | || | Sbjct 37892 TTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 37951 Query 165323 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCA 165382 ||||||||||| || || ||| ||| ||| | || || ||||| | |||| ||| Sbjct 37952 TGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCA 38011 Query 165383 GTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCT 165442 || || || |||||| || ||||||||| || | | | | ||||| ||||| || Sbjct 38012 GTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCG 38071 Query 165443 CAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502 ||||| |||||| | ||| | ||| |||| ||| | ||||||||| | || || ||| Sbjct 38072 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACAC 38131 Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGAATTAGCACGTCTCATCGG 165561 || || || | | ||||||| ||| || || ||||| || || | || ||||| | || Sbjct 38132 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 38190 Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 ||| ||||| ||||| || ||||| |||||||| ||||| || || |||||| || || Sbjct 38191 TATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATT 38250 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 | || || ||||| || ||| | |||||||| ||||||||| ||| ||||| ||||| Sbjct 38251 CTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 38310 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || ||| | || | | ||| ||||||| |||||||||||||| | ||||| || || Sbjct 38311 TATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38370 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 |||||||||||| ||||| || | || |||||||| | ||||| || ||||| | || Sbjct 38371 TATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCAC 38430 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 |||||| ||||| || | | |||||||||| | |||||| || ||| || ||| | Sbjct 38431 AGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACC 38490 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 || ||| |||||||| || || ||||| || || || | ||||||||||| || || Sbjct 38491 AACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 38550 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981 ||| | || || || || | ||| | |||||||| ||| | ||||||||||| | Sbjct 38551 TGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAAC 38610 Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041 ||| | ||||||||||| | |||||| ||||| | || | || | | || || || Sbjct 38611 AGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGA 38670 Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101 || ||||| |||||| | | || || ||||| ||||| |||||||| |||||||| || Sbjct 38671 TTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 38730 Query 166102 AAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGA 166161 ||| || | || ||||||||| || | | ||| |||| || || ||||| ||||| Sbjct 38731 AAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGA 38790 Query 166162 GAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||| ||||| || || ||| | || | || ||||| || Sbjct 38791 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556884067912440