Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq5733 710 0.0 >seq5733 Length=57551 Score = 710 bits (786), Expect = 0.0 Identities = 753/987 (76%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| ||| | || ||||| | ||| | | || | |||||||||||||| ||| Sbjct 41856 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 41797 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||||||||| ||||||||||| || || ||||| | || || || || ||||| Sbjct 41796 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 41737 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || |||||||| || ||| | ||||| || || || | || | || ||||||||| Sbjct 41736 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 41677 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || ||| ||||||||||| |||| ||| ||||| || ||| | |||||||||||| || Sbjct 41676 ATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 41617 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | || |||||| | || || |||||||||||||| | ||| | Sbjct 41616 TGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 41557 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAG 168849 || |||||| || | || | || ||||||||| | | |||||| ||| | ||| | Sbjct 41556 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGC-TACCG 41498 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 |||| ||| | |||||||| | || |||| ||||| |||||| ||||||||| ||| Sbjct 41497 TTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 41438 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 ||||||| | || |||||| |||| || ||| |||||||||||||||||| |||| || Sbjct 41437 AGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTAT 41378 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 41377 TTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCC 41318 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 ||||||||||| || || || ||| |||| ||||||||| ||||| || ||||| || Sbjct 41317 ATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGG 41258 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| |||||||||||| | ||||| | || ||| || | | |||| ||||| || Sbjct 41257 TTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGG 41198 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 |||||| ||||| |||||||||||||| || || || || || ||||| || ||||| || Sbjct 41197 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGG 41138 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 | ||||||||||| || || ||||||||||||||| | | | ||||||||| |||| Sbjct 41137 ACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGC 41078 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | ||||||||| || | |||||||| || | ||| | |||| |||||||| || Sbjct 41077 TGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAA 41018 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACG--GTAAGATCATTCC 169386 ||| ||||| || ||||| |||||||||||||| ||| || || | || ||||| Sbjct 41017 CTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCA---A 40961 Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 || |||| |||| | | ||| | || | | ||||||||||||||||| || ||||| Sbjct 40960 CACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAA 40901 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 ||| ||||||||||| ||||| ||||| Sbjct 40900 CGCGCACAACTTCCCTCTAGATTTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564400318152480