Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5733 641 5e-179 seq225 527 7e-145 >seq5733 Length=57551 Score = 641 bits (710), Expect = 5e-179 Identities = 708/939 (75%), Gaps = 8/939 (1%) Strand=Plus/Minus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||||||||| | ||||||||| || | ||||| || ||||||||| | Sbjct 41814 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 41755 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 41754 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 41695 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | ||||| || |||||||| ||| | ||||||||| |||| || ||||| || ||| Sbjct 41694 CTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGT 41635 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| | |||||||| || | ||||| || ||| | ||||| |||||| Sbjct 41634 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGT 41575 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || | ||| | || |||||| | | ||| | | ||||||||| | | Sbjct 41574 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 41515 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| ||| | ||||| ||| | || ||||| | ||||| | ||||| || Sbjct 41514 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 41455 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| | ||||||| ||| || ||| | || || ||| | || || ||| ||||||||| Sbjct 41454 GTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGAT 41395 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| ||||||| || ||||| |||||||| ||||| || ||||||||||| || Sbjct 41394 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 41335 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 |||||||| ||||| || ||||| ||||| || || || || ||||||| ||||||||| Sbjct 41334 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 41275 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 ||| || |||||||||||| | || |||||| | ||||| | || |||||||| Sbjct 41274 TTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGAC 41218 Query 172462 GA---ATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 172518 | ||| |||||||| ||||| |||||||||||||||||||| |||||||| ||| Sbjct 41217 GGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTA 41158 Query 172519 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGA 172578 || ||||||||||||||||| ||| | |||||||| || || ||||||||||||| | Sbjct 41157 GCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGT 41098 Query 172579 AGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 172638 | | ||||||||| |||| | | || |||||| || | |||||||| || | ||| Sbjct 41097 GCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGT 41038 Query 172639 ATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCT 172698 | |||| |||||||| ||| | ||||||||||||||||||||||||||||| ||| | Sbjct 41037 GTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGT 40978 Query 172699 AACGGTAAGATTGTTC-CTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGA 172757 | ||| | || || || |||| |||| || | ||| | || | |||||||||| Sbjct 40977 CAAGGT-CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 40919 Query 172758 AGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 ||| ||||| ||| | || || ||||||||||| |||| Sbjct 40918 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 527 bits (584), Expect = 7e-145 Identities = 749/1050 (71%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 |||||||| ||||| | | || ||||||||||| ||||||||||||| || || || Sbjct 37813 AAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGG 37872 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 ||||| || |||||| | | || || | ||| | | ||||| ||||| ||| Sbjct 37873 TTGGTCAGGCCTTTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 37932 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 || || || |||||||| |||||||| ||||| | |||||||| ||| | |||||| Sbjct 37933 TACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATG 37992 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 173180 ||||| ||||| | |||||| || ||||| | || |||||||| | | || Sbjct 37993 TAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTT 38052 Query 173181 CCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATG 173240 | |||||||||||||| ||||| ||| |||||| | ||| | || ||| |||| Sbjct 38053 ATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATG 38112 Query 173241 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGA 173300 | ||| ||||| |||| || | ||||| | || || ||| | ||||| || || Sbjct 38113 GGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGA 38172 Query 173301 GATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGC 173360 |||||| | |||||||| || | || ||||||||| | |||||||||| ||| || Sbjct 38173 GATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGC 38232 Query 173361 AGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCA-GCACAGTTGGTTCTTCGCAC 173419 || || | | || ||||| || || ||||| || ||| |||||||||||||| | Sbjct 38233 GGTATTTGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCA-AGTTGGTTCTTCGCTC 38291 Query 173420 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACA 173479 | || || || ||||| || || || | | | |||||| ||||||||||||| ||| Sbjct 38292 CAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACT 38351 Query 173480 TTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTAT 173539 ||| | |||||||| || ||||||||||| ||||| || |||| || |||||| ||| Sbjct 38352 GGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTAT 38411 Query 173540 GTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTG 173599 ||| |||||||| || ||||| | || ||| | | |||||| || Sbjct 38412 CTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGA---------------TG 38456 Query 173600 AAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTT 173659 | | | | ||| | || ||| | || ||| || ||||| ||||||||||| Sbjct 38457 --GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTT 38510 Query 173660 ATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACA 173719 || ||| | |||||||| ||||||||||| || || |||||| | || || || |||| Sbjct 38511 ATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCTCGAACA 38570 Query 173720 AAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCA 173779 || | | | || ||| ||||||| || || ||||| | ||| | |||||| || Sbjct 38571 AACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGGTTTATGGACAAGTTCTT 38630 Query 173780 TAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 173839 | ||||| || ||| | ||| | || | ||||||||||| || |||||||||||| | Sbjct 38631 TTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAGAGCTTC 38690 Query 173840 GAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAA 173898 | || || ||||||||||| || || |||||||||||||| ||||| ||| || |||||| Sbjct 38691 GTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATAT-CTTATTAAATGAA 38749 Query 173899 GGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAA 173958 ||||| ||| | |||||| | | ||| ||||||||||| || || ||||| ||||| Sbjct 38750 GGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAATTTTGTATTCCCAGAG 38809 Query 173959 GAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || |||||| | || ||||| |||||| Sbjct 38810 GAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588008191405360