Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq5733 673 0.0 seq225 572 2e-158 >seq5733 Length=57551 Score = 673 bits (746), Expect = 0.0 Identities = 739/989 (75%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 ||||| ||| ||| |||| | || ||||| | |||||| | || ||||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTC 167198 || ||| | |||||||| || || | |||| || | ||| ||||||||||| ||| || Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 167199 GGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTAT 167258 | || ||||| || || |||||||||||||| |||||||| ||||| ||||| | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 167259 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTC 167318 || |||||||| ||| | ||||||||| ||||| |||||| ||||||||| |||||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 167319 TATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA 167378 || || | |||||||| || | | ||||||||| | ||||| |||||||||| |||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 167379 CTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTC 167438 || ||||| || |||||| | | || | | ||| ||||| ||||| |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 167439 TCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCA 167498 |||||| | || |||||||| ||||| | || || | ||| |||||||| |||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 167499 GCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCT 167558 |||||||| |||||| | || || || | || |||||| |||||||| | |||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 167559 CTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 167618 | ||||| |||||||| ||||||| |||| | || ||||||||||| |||||||| || Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 167619 ATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCA 167678 |||||||| ||||||||| || |||||||| || || || || ||| | |||||||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 167679 ATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCA 167737 |||||||||||||| || || ||| | | |||||| || ||| || | || | Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGCGTATCT 41209 Query 167738 G--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCAT 167795 | ||||| |||||||| ||||| || |||||||| || || |||||||| ||||| || Sbjct 41208 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 41149 Query 167796 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCAC 167855 |||||||| || || | |||||||||||||| ||||||||||| || | | ||| Sbjct 41148 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACAC 41089 Query 167856 TTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNN 167915 |||||||| || |||||||| ||||| |||||||||| Sbjct 41088 TTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 41029 Query 167916 NNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAG 167975 ||| ||| | |||||||||||||||||||| || | |||||||| ||| Sbjct 41028 ATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGT 40969 Query 167976 GTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCAC 168035 || | |||||||| ||| | |||||||||||| | | ||||||||||| |||||| Sbjct 40968 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 40909 Query 168036 GAGCGTAATGCTCACAACTTCCCTCTCGA 168064 || ||||| || |||||||||||||| || Sbjct 40908 GAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 572 bits (634), Expect = 2e-158 Identities = 739/1010 (73%), Gaps = 14/1010 (1%) Strand=Plus/Plus Query 168493 TCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 168552 ||||||||||| | ||||| ||||||||||| ||| |||||||||| || ||| || || Sbjct 37833 TCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTA 37891 Query 168553 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGT 168611 ||||| || || | |||||| |||| || ||| | || || || |||| || || | Sbjct 37892 TTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 37951 Query 168612 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCA 168671 ||||||||||| || || ||| ||| ||| | || || ||||| | |||| ||| Sbjct 37952 TGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCA 38011 Query 168672 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCA 168731 || || |||||| | ||||||||| || | | | | ||||| ||||| || Sbjct 38012 GTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCG 38071 Query 168732 CAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 ||||| |||||| | ||| |||| |||| ||| | ||||||||| | || || ||| Sbjct 38072 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACAC 38131 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGG 168850 || || || | | |||| || ||| || || ||||| || || | || ||||| | || Sbjct 38132 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 38190 Query 168851 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 ||| ||||| ||||| || ||||| |||||||| ||||| || || |||||| || || Sbjct 38191 TATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATT 38250 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 | || || ||||| || ||| | |||||||| ||||||||| ||| ||||| |||| Sbjct 38251 CTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 38310 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || |||||||| | | ||| ||||||| ||||||||||||||||| |||||||| || Sbjct 38311 TATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38370 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 |||||||||||||||||| ||||| ||||| || || | ||||| |||||||| | || Sbjct 38371 TATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCAC 38430 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 |||||| ||||| || | | |||||||||| ||||| || ||| || ||| ||| Sbjct 38431 AGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACAC 38489 Query 169151 C-ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 169209 | || || ||| || || ||||| ||||| || || || | ||||||||||| || | Sbjct 38490 CAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTT 38549 Query 169210 TTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 169269 ||||| | || ||| || || | ||| | |||||||| ||| | ||||||||||| | Sbjct 38550 TTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAA 38609 Query 169270 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 169329 ||| | ||||||||||| | |||||| ||||| | || | || | | || || | Sbjct 38610 CAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACG 38669 Query 169330 ACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCA 169389 | || || || |||||| | | || || ||||||||||| ||||| || |||||||| | Sbjct 38670 ATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 38729 Query 169390 AGAACATCCTCTTGAACGAAGGTCT----TCGTGCATGGTTAGCACCTATTGATCAACCT 169445 | || ||| | || || |||||| | ||||| |||| | |||| || ||||| Sbjct 38730 AAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAGACCAACCA 38785 Query 169446 CATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||||| || ||||| ||||| ||||| || | || || || || ||||| Sbjct 38786 CATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560566998532400