Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq5733 628 4e-175 >seq5733 Length=57551 Score = 628 bits (696), Expect = 4e-175 Identities = 719/965 (75%), Gaps = 6/965 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | |||||||| ||||| | ||||| || | | || Sbjct 41835 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACA 41776 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 ||||| | || |||||| | || |||||||| |||||||| || |||||||| || ||| Sbjct 41775 GCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATC 41716 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || ||||| ||||| || | | || || |||||||| ||| | ||||| ||| | Sbjct 41715 CGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATT 41656 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||||||| ||||| || || | ||||||||||| | |||||||| || | || ||| Sbjct 41655 CCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGAC 41596 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||||| ||||| ||||| |||| |||||| || | || |||||| | | ||| | Sbjct 41595 GAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTA 41536 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| ||| | | ||||||||| ||| | ||||| ||| | |||||||| Sbjct 41535 GCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATT 41476 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | || |||| ||| || || ||| |||| || | |||||||||| | || || ||| | Sbjct 41475 TTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATT 41416 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 || || ||| |||||||||| |||||| | || || ||||| || ||||||| |||| Sbjct 41415 GGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATG 41356 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 || || ||||| || || ||||||||||| |||||||||||||| ||| ||||| ||| Sbjct 41355 TTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCT 41296 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| || ||||| || || ||| ||| ||||||||||| ||||| |||||| | || Sbjct 41295 GGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTA 41236 Query 215915 ATCAGAGAGACAACTGAGCAAGA---ATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 ||| | || |||||| | | |||| |||||||||||||| ||||||||||| Sbjct 41235 ATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAA 41179 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 41178 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATAC 41119 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || ||||||||||||| | | | ||||||||| | || |||| || ||| | || Sbjct 41118 GCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGT 41059 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 |||||| |||||| | ||||| |||||||| || ||| | ||||||||||||||| Sbjct 41058 ATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTC 40999 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || ||| || || |||||||| ||| || | ||| Sbjct 40998 AACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAAC 40939 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || | | |||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 40938 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 Query 216272 TTGGC 216276 || || Sbjct 40878 TTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745027106594480