Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5733 740 0.0 seq225 549 2e-151 >seq5733 Length=57551 Score = 740 bits (820), Expect = 0.0 Identities = 742/957 (78%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||| | || |||||||||| ||||| | ||||||||||| | || | || || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| |||||| | |||||| | ||||||||||| || |||||||| |||||||| ||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | || Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || ||||| |||||| |||||||||||||| | ||||||||||| || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC- 182119 || || ||||||||||||| |||||| || || || |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 41533 Query 182120 --CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 ||||||||||||||| ||||||||| ||||| ||||| |||||||| ||||| | Sbjct 41532 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 41473 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 ||||| | ||| |||||||| |||||||||||||| ||||||||||| || || | || Sbjct 41472 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGA 41413 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 |||||| ||||| |||| ||||| | || || || || || ||||||| ||||| Sbjct 41412 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 41353 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || |||||||| || ||||||||||||||||| || ||||| ||| ||||| || ||| Sbjct 41352 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 41293 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 || || ||||| || | || ||||| |||||||||||| | || |||||| | || Sbjct 41292 GTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATC 41233 Query 182418 CGTGAGACGACTGAGCAAGA-GTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAA 182474 ||||| || ||| | | || | | ||||| |||||||| ||||| ||||||||| Sbjct 41232 CGTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAA 41176 Query 182475 GAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCA 182534 || || || |||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 41175 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCG 41116 Query 182535 TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATC 182594 ||||||||||| ||| | || ||||||||| | ||||||||||| ||||| || ||| Sbjct 41115 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATC 41056 Query 182595 TGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAAC 182654 ||||| || || |||||||| || |||||||| ||| | |||||||||||||||||| Sbjct 41055 TGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAAC 40996 Query 182655 CAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGT 182714 || || | ||||| |||| |||||||| | ||||||||||| || | | |||||| Sbjct 40995 CAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 40936 Query 182715 GCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGAT 182771 |||| | | ||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct 40935 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 549 bits (608), Expect = 2e-151 Identities = 741/1015 (73%), Gaps = 18/1015 (2%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | ||||| ||||| || || ||| | || ||||| || || || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 183253 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 183311 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 183312 GTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 183371 |||||| |||||| | || ||||| ||| | ||||| |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || || || || ||||||||| || | | ||| | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 183432 AGGGGACTTTCAA-CGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 ||| || ||||| || ||| ||| |||| ||| | ||| |||| | ||||| |||| Sbjct 38074 AGGAGA-TTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACG 38132 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCG-CTTGATTGG 183548 |||| |||| | | ||||| ||| || || || || || || | ||||| |||| | || Sbjct 38133 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTG-TAGG 38190 Query 183549 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATT 183608 ||| ||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||| Sbjct 38191 TATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATT 38250 Query 183609 CCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGC 183668 | | || ||||| || || || | |||||||| || || ||||| ||||| ||||| Sbjct 38251 CTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 38310 Query 183669 AATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 || || |||| |||| ||| | || |||||||| |||||||| | || || ||||| Sbjct 38311 TATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38370 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 ||||||||| || || || || ||||||| ||| || | ||| || ||||| | ||| Sbjct 38371 TATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCAC 38430 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 |||||| |||||| | | ||||||||| || |||||||||||| || ||| | Sbjct 38431 AGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACC 38490 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 || ||| |||||| || ||||| ||||| ||||||||| | |||||||| ||||| || Sbjct 38491 AACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 38550 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 || || || || || || |||||| | || ||||| ||||| ||||||||||| | Sbjct 38551 TGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAAC 38610 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA 184028 ||| | ||| |||| |||| || |||| | || | ||| | | || || || Sbjct 38611 AGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGA 38670 Query 184029 TTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAA 184088 ||| ||| ||||||| | | || || ||||||||||||||||| || |||||||| || Sbjct 38671 TTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 38730 Query 184089 GAACATACTTCTT-AATGAAGG-ACTA---CGTGCATGGTTAGCACCTTCTGATCAACCA 184143 || || ||| || |||||||| | || |||| |||| | |||| || |||||| Sbjct 38731 AAATAT-CTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAGACCAACCA 38785 Query 184144 CATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 ||||| |||||| |||| ||||||||||| ||||| | || || || |||| || Sbjct 38786 CATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611651262083800