Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5733 717 0.0 seq225 571 7e-158 >seq5733 Length=57551 Score = 717 bits (794), Expect = 0.0 Identities = 754/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 164755 TGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTC 164814 |||||| || ||| ||| | ||| ||| | |||||| | || ||||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 164815 GGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATC 164874 |||||| | |||||||| || | | ||||||| || || || | || |||||| Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 164875 GCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTAC 164934 || || || || || || || |||||||| |||||||| || || || || || | ||| Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 164935 GGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTC 164994 || |||||||| ||| | ||||| || |||| ||||||||| || || |||||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 164995 TATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAG 165054 || || ||||||||||||| | | || || ||| | |||||||||||||||||||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 165055 TTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTG 165114 | || || || |||||| | | |||||||||||||||||||| ||||| |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 165115 TCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCT 165174 ||||| | || |||||||||||||||| |||||| | || || || ||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 165175 GCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCT 165234 || | ||||| ||| | || || || | || ||||| || |||||||||||||||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 165235 CTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTT 165294 | ||||| ||||||||||| |||| ||||| || |||||||||||||| ||||||||| Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 165295 ATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 165354 ||||| || ||||| ||| || |||||||| || || ||||||||| | ||| |||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 165355 ATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAA-ACAGAGAGTCA 165413 ||||| || |||||| || || | |||| || ||||||| || | | || Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTATCT 41209 Query 165414 G--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCAC 165471 | ||||||||||| || || |||||||||||||| || || |||||||| ||||| ||| Sbjct 41208 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 41149 Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| || ||| | || ||||||||||| |||||||| || ||| | | ||| Sbjct 41148 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACAC 41089 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 165591 |||||| | || |||||||| || || ||||||||||| ||||||||||||||||| || Sbjct 41088 TTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 41029 Query 165592 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAA 165651 |||||||| ||| | |||||||||||||||||||| || ||||||||||||| Sbjct 41028 ATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGT 40969 Query 165652 ATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCAT 165711 | ||| |||||||||||| || | |||||||||| | | ||||||||||| ||||| Sbjct 40968 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 40909 Query 165712 GAGCGTAACGCTCACAACTTCCCCCTCGA 165740 || |||||||| ||||||||||| || || Sbjct 40908 GAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 571 bits (632), Expect = 7e-158 Identities = 734/1007 (73%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||| | ||||||||||||||||| ||| |||||||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 166233 CCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTG 166291 ||| || || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 166292 GTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGT 166351 ||||||||||||| | ||| |||| | || || ||||| | |||| ||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 166352 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCA 166411 || || |||||| | ||||||||| || || || | | ||||| ||||| || || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 166412 AGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGG 166471 ||| |||||| | ||| ||| |||| || | ||||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGAAATCGCTCGTCTAGTAGGTA 166530 ||| |||| ||||||| ||| || || || || || || ||||||||||| ||||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 166531 TTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 166590 ||||||| ||||| ||||| || || ||||| |||||||| || || ||| ||| || Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 166591 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 166650 | || || ||||| || ||| | |||||||| ||||||||| ||| ||||| |||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 166651 TCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATA 166710 | |||||||| | | ||| | ||||| ||||| ||||||||||| || ||||| |||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 166711 TGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAG 166770 |||||||||||||||| ||| | || |||||||| | ||||| || ||||| | |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 166771 TAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTA 166830 |||| || || || | | |||||||||| ||||| || ||| || || | | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 166831 CTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCG 166890 | ||| |||||||| ||||| ||||| ||||| || | | |||||||| || || | Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 166891 GTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 166950 || | || || || || | ||| | |||||||| ||| | ||||||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 166951 GTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 167010 || | ||||||||||| | |||||| ||||| | || | || | | || || || | Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 167011 TTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGA 167070 | || || ||||| || | || || || ||||| || |||||||| ||||| || || | Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 167071 ACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGA 167130 | || | || ||||| ||||| | || |||||||| | || ||||| ||||| | Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 167131 GTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||| |||||||| || |||||| | || | || ||||| || ||| Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563619575258240