Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq5733 670 0.0 >seq5733 Length=57551 Score = 670 bits (742), Expect = 0.0 Identities = 763/1021 (75%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | || |||||| | ||||| | || | |||||||||||||| || |||||||| Sbjct 41848 TTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCC 41789 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | ||||| |||| ||| |||||| ||| | |||||||||||||| || || || || Sbjct 41788 AACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGA 41729 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 |||||||| ||| | ||||| || || || ||| | | || || |||||||| ||| | Sbjct 41728 TATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCAC 41669 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 ||||||||| |||| ||| ||||| || ||| | |||||||| || |||||||||| Sbjct 41668 AGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGC 41609 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 || || |||| |||||| | || |||||||||||||| ||| | || | || ||||| Sbjct 41608 TGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT 41549 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | || ||||||||| | | |||||||| ||||||||||| || Sbjct 41548 CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 41489 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||| | ||||| | || |||||||| | ||||||| || |||||||| Sbjct 41488 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTT 41429 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 ||| || || | || || || ||||| || || |||||| ||||||| || ||||| Sbjct 41428 AGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTAC 41369 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 41368 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 41309 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 ||| || ||||||||| |||| || ||| | | ||| || ||||||||||| ||||| Sbjct 41308 GGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGT 41249 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATT 170357 ||||||| | ||||| | || || ||| || || ||||| || |||||||| Sbjct 41248 AACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATT 41189 Query 170358 CGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTAT 170417 |||||||||||||||||| |||||||| || || ||||| || |||||||| | | || Sbjct 41188 CGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAAT 41129 Query 170418 CTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCC 170477 ||||||||| || || || ||||| ||| | | ||||||||| | ||| ||| || Sbjct 41128 CTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCC 41069 Query 170478 TGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGG 170537 || ||| | |||||||||||| | | ||| || | || |||||||||||| | || || Sbjct 41068 AGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGG 41009 Query 170538 ATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGA 170597 || ||||||||||| ||| | || ||| | ||| || | || ||||| || Sbjct 41008 TTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGA 40949 Query 170598 CGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTT 170657 | || | ||| | || | ||||||||||||||||||| || ||||| || |||||||| Sbjct 40948 CATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 40889 Query 170658 CCCACTTGACTTGGC---AACTGCTGAGACATCTGAAGTTGCATTAATTGCTCCTTCTGT 170714 ||| || || || || | || || | || ||||||||||| |||||| |||| Sbjct 40888 CCCTCTAGATTTAGCCGTATCTAATG-TTCTTC--CAGTTGCATTAAACGCTCCTGCTGT 40832 Query 170715 T 170715 | Sbjct 40831 T 40831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582805371954400