Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq5733 639 2e-178 >seq5733 Length=57551 Score = 639 bits (708), Expect = 2e-178 Identities = 732/981 (75%), Gaps = 2/981 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || ||||||||||||||||| ||||||||||| | | ||||| || | Sbjct 40886 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATA 40945 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || |||| ||||| ||| ||||| |||| || |||||||| Sbjct 40946 ATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTGAAGTTG 41005 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || | ||||||||||| || |||||||| ||||||| ||||| || || || Sbjct 41006 AAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACA 41065 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 |||||||| ||||| ||||| ||||| | || ||| |||||||| || || ||| Sbjct 41066 ACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCGTATTGG 41125 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||| || ||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 41126 AAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 41185 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| |||||||| ||||| || || ||| |||||| ||||||| | ||| Sbjct 41186 CCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATTAAACTAGAT 41245 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || ||||| ||||| ||||| ||| ||||| || |||||| || ||||||||||| || Sbjct 41246 GTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCAGCAACACCA 41305 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||| || || || |||||||| ||||| ||||| || ||||| || | |||| ||||| Sbjct 41306 GCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAGTTG 41365 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || ||||| | ||||| ||||||||||| |||||| || | || || Sbjct 41366 AAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCAATTGGGTAA 41425 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 || | |||||| |||||||| || || |||||||| ||| |||| || | ||||| ||| Sbjct 41426 ACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAAGGA 41485 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCACCAAT 84643 ||||| || | ||| || ||||||||||||||| ||||||| ||||| | |||| | Sbjct 41486 CGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT-AGCAAGCTACACCTAA 41544 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACT 84703 | |||||| || || |||||||| ||||| ||||| || || ||||| ||||| | | Sbjct 41545 TAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTCGTCTACAGA 41604 Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGC 84763 || |||||||||| || ||||| || | ||||||||| ||||| |||| || || Sbjct 41605 CGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGGAATAACTGC 41664 Query 84764 ACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTC 84823 ||| | || |||||||||||||| | || || ||||| ||||| ||||||||||| || Sbjct 41665 ACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGGATACCATC 41724 Query 84824 AATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| ||||| | | ||| || |||||||| ||| || || | | || Sbjct 41725 GATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTAATAA 41784 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||||| ||||| | | || |||||||| | || | |||||| | ||| |||| Sbjct 41785 TGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTGTGCTAGTGAT 41844 Query 84944 CCAATCACAGAAGTTCTGCCA 84964 |||| |||||| || ||| Sbjct 41845 CCAAGAGCAGAAGCGCTCCCA 41865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571231818477080