Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq225 91.5 1e-12 >seq225 Length=49998 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || ||||||||||| || || || || ||||| || ||||| ||| Sbjct 35279 GCAGTTATTACAGTGCCTGCATATTTTAACGATTCTCAGCGACAAGCGACGAAAGACGCT 35338 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || | | ||| | |||||||| |||||||| || || || |||||| Sbjct 35339 GGTAAGATTGCGGGTTTAGAAGTTTTACGTATTATTAATGAACCAACAGCAGCAGCACTT 35398 Query 550520 GCATATGG 550527 || ||||| Sbjct 35399 GCTTATGG 35406 Score = 89.7 bits (98), Expect = 4e-12 Identities = 222/334 (66%), Gaps = 15/334 (4%) Strand=Plus/Minus Query 361504 ttttttttGAAAATCAAGTATTACATGATTCATGATTAAATAATCTATATCTTCACCACC 361563 |||| || ||||||| || | || ||||| ||| | | || | ||| || ||||| Sbjct 35593 TTTTGCTTCAAAATCAGCTAAGATATATTTCATTATTGCAGAGTCAAAATCATCTCCACC 35534 Query 361564 TAAATGTGTACTACCGCTAACTGCTAATGTTCTAAATAAGCCATTATTAATATTCATGAG 361623 |||||| || ||| | ||||||| | ||||| |||| || | | | Sbjct 35533 TAAATGACTATCACCAGCAGTTGCTAATACTTCAAATACACCATCTCCAACTTCTAAAAT 35474 Query 361624 ACAAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCCCCCCGTTTTTATT 361683 ||||||| | ||| || ||||||||||| | || |||||| ||||| Sbjct 35473 TGAAACATCAAATGTACCACCACCTAAATCAAAGAT--TAATAT------CGTTTCA--- 35425 Query 361684 TTTCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTAT 361743 ||| | |||| || || ||||||||| | || || ||||||||||| ||||| || Sbjct 35424 TTTGC---TTTTTTGTCTAA-ACCATAAGCAAGTGCTGCTGCTGTTGGTTCATTAATAAT 35369 Query 361744 TTTAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATC 361803 | ||| | | ||||| || || || ||| || ||||| || || | ||| Sbjct 35368 ACGTAAAACTTCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTGTCGCTGAGAATC 35309 Query 361804 ATTAAAATATGCAGGAACAGTAATCACTGCTTTT 361837 |||||||||||||| || ||||| ||||||||| Sbjct 35308 GTTAAAATATGCAGGCACTGTAATAACTGCTTTT 35275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028986572731990