Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq5733 499 9e-137 >seq5733 Length=57551 Score = 499 bits (552), Expect = 9e-137 Identities = 718/999 (72%), Gaps = 14/999 (1%) Strand=Plus/Minus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || ||| | || || || || |||||| | || | || |||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 25853 GGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATC 25912 || || | ||||| || ||| | |||| || | || || || | || |||||| Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 25913 GCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTAC 25972 |||||||| || |||||||| ||||| || ||||| ||||| | || || | | ||| Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 25973 GGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTT 26032 |||||||| || || |||| ||||| | || |||||||| || || | || || Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 26033 TACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAA 26092 ||||| | |||||||||| | | ||||||||||| ||||| || || || || ||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 26093 CTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA-GGGA-GACAGTGGGAAC 26150 || | | || ||||||||| |||| ||||| || || |||| | | ||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTA--CATGGGACGTGAATGGGAAC 41508 Query 26151 TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 | ||| | |||| ||| | || ||||| || || || | |||| ||| || | | Sbjct 41507 TTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTG 41448 Query 26211 CAGC-TCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATG 26269 |||| ||| ||||| ||||||||||| || | |||||||| || || |||||| ||| Sbjct 41447 CAGCATCT-GCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATG 41389 Query 26270 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATA 26329 ||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 41388 CCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 41329 Query 26330 CTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCT 26389 || |||||||||||||||||||||||||||||||| || || |||||| || | ||| | Sbjct 41328 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 41269 Query 26390 GCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTC 26448 ||||||||||| | | || || | || ||| | | ||||| ||| | || || Sbjct 41268 GCTATGCACGGTTCTCTTGTAACAT-CTAGTTTAATCCGTGAAACTGAAGACGGCGTATC 41210 Query 26449 ACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 || || || || || || || ||||| ||||| || || || || || |||||||| Sbjct 41209 TGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 41150 Query 26509 CGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCA 26568 ||| |||||||| | ||||| || || || |||||||| || ||| ||| || | || Sbjct 41149 CGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACA 41090 Query 26569 TTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCAC 26628 ||||| | ||| | ||||| ||||| || || ||| | || || | ||| | | || Sbjct 41089 CTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTAC 41030 Query 26629 AATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAA--TGG 26685 |||||||||||| |||| ||||| ||||| ||||| ||||| || ||| || || | | Sbjct 41029 TATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCG 40970 Query 26686 AAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTAT 26745 ||| | || || |||||||| | | ||||| ||| | | || | ||||| || Sbjct 40969 TGTGATCA-AC--ACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAAT 40913 Query 26746 GCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||| ||||| || || ||||| || || || ||||| Sbjct 40912 GCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146716205358024