Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq5733 569 6e-158 >seq5733 Length=57551 Score = 569 bits (630), Expect = 6e-158 Identities = 720/981 (73%), Gaps = 14/981 (1%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||||||||||||| || || | || | |||||| ||||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | ||||| |||||||| || || | ||| || | | Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||| ||||| | |||||| |||||| || || || || Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 41113 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 41114 CTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 41173 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 36330 ||||||||||| |||||||| || || ||||| |||| | ||| || ||||||| Sbjct 41174 TCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATAC--GCCGTCTTCAGTTTCAC 41231 Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390 | || | || || |||||| |||||||||||| |||||||| |||||| || | Sbjct 41232 GGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACA 41291 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 41292 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 41351 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 | ||||| || |||||||| || |||||||| | |||||||||||||||||| || |||| Sbjct 41352 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 41411 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 |||||| ||||| ||||||||||| ||| ||||||| || || || ||||| |||||| Sbjct 41412 GTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 41471 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGT 36627 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| || Sbjct 41472 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 41531 Query 36628 AAGCTGAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 ||||| | ||| ||| || ||||| || || | ||||| || || || ||||| || Sbjct 41532 AAGCT---ACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 41587 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTC 36746 | ||||||||| | | ||||||||||| | |||||||||||||| ||| || ||||| Sbjct 41588 AGCCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 41647 Query 36747 GATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 36806 || || | | ||| || | ||| ||||||||||| || | | || ||| | || Sbjct 41648 GAACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 41707 Query 36807 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 36866 || ||||| |||||||| ||||| || ||||| || || | || || || | || || Sbjct 41708 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCA 41766 Query 36867 G-TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | | |||||||| | || |||||||||| || || ||||| || | || | || Sbjct 41767 GCTTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 41826 Query 36926 GTTGTTTGTACTTGTAACCCA 36946 ||| | ||| || || | ||| Sbjct 41827 GTTTTCTGTGCTAGTGATCCA 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150443946334254