Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq5733 590 2e-164 >seq5733 Length=57551 Score = 590 bits (654), Expect = 2e-164 Identities = 722/978 (74%), Gaps = 8/978 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| || ||||||||||| || || ||||||||||||||||||||||| | | Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | | || ||||||||| | | | ||| | ||||| ||||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | ||||| |||||||| | || | || || | | Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | || || ||||| | ||| | |||||| |||||| ||| ||||| || Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 41113 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 || || || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 41114 CTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 41173 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT--GTTTCAC 5552 ||||| ||||| |||||||| || || ||||| ||| || ||| || ||||||| Sbjct 41174 TCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGA--TACGCCGTCTTCAGTTTCAC 41231 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | ||| || |||||| || ||||||||| ||| |||| |||||| || | Sbjct 41232 GGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACA 41291 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||| ||||| || |||||||| || ||||||||||| ||||||| Sbjct 41292 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 41351 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | ||||| ||||| ||||||||||| ||||| | ||||||||||||| ||| || || | Sbjct 41352 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 41411 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 |||| | ||||| ||||| ||||||| | ||||| || || || ||||| | |||| Sbjct 41412 GTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 41471 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAG 5852 || ||||||| || ||||| ||||| | ||| ||||||||||||| ||||||| ||| Sbjct 41472 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 41531 Query 5853 CTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 || | ||| ||||| |||||| || || || |||||||| || || || ||||||||| Sbjct 41532 AAGCTACACCTAATAA-GAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGC 41590 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || || || | | || |||||||| | || |||||||| | ||||| ||||| || Sbjct 41591 CACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAA 41650 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 || || | ||| || |||| || ||||||||||| || | || ||||| || || ||| Sbjct 41651 CTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGT 41710 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG-T 6090 ||||| || || ||||| || ||||| ||||| || | ||| || | || || |||| | Sbjct 41711 TCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCAGCT 41769 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 || || ||||| | || || |||||||| ||||| ||||| || | || | ||||| Sbjct 41770 TGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 41829 Query 6151 GTTGGTGCTAGTAACCCA 6168 | |||||||| | ||| Sbjct 41830 TTCTGTGCTAGTGATCCA 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152638993810386