Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq5733 592 5e-165 >seq5733 Length=57551 Score = 592 bits (656), Expect = 5e-165 Identities = 723/980 (74%), Gaps = 12/980 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | ||||||||||||||| || || | || | |||||| ||||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || ||||| | ||||| |||||||| || || | ||| || | | Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||| ||||| | |||||| |||||| ||| || || || Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 41113 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 41114 CTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 41173 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 25810 ||||||||||| |||||||| || || ||||| |||| | ||| || ||||||| Sbjct 41174 TCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATAC--GCCGTCTTCAGTTTCAC 41231 Query 25811 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 25870 | || | || || |||||| |||||||||||| |||||||| |||||| || | Sbjct 41232 GGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACA 41291 Query 25871 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 25930 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 41292 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 41351 Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990 | ||||| || |||||||| || |||||||| | |||||||||||||||||| || |||| Sbjct 41352 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 41411 Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050 |||||| ||||| ||||||||||| ||| ||||||| || || || ||||| |||||| Sbjct 41412 GTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 41471 Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGT 26107 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| || Sbjct 41472 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 41531 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||||| | || | | ||||| || || | |||||| || || |||||||| || | Sbjct 41532 AAGCT---ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 41588 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 ||||||||| | | ||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 41589 GCCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 41648 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || | | ||| |||| ||| ||||||||||| || | | || ||| | || | Sbjct 41649 AACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 41708 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | ||||| |||||||| ||||| || ||||| || || | || || || | || || | Sbjct 41709 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCAG 41767 Query 26348 -TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 26406 | |||||||| | || |||||||||| || || ||||| || | || | ||| Sbjct 41768 CTTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGG 41827 Query 26407 TTGTTTGTACTTGTAACCCA 26426 || | ||| || || | ||| Sbjct 41828 TTTTCTGTGCTAGTGATCCA 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151983039389676