Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq5733 592 5e-165
>seq5733
Length=57551
Score = 592 bits (656), Expect = 5e-165
Identities = 723/980 (74%), Gaps = 12/980 (1%)
Strand=Plus/Plus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||| ||
Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
|||||||| | ||||||||||||||| || || | || | |||||| |||||
Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632
|| |||||||| || ||||| | ||||| |||||||| || || | ||| || | |
Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053
Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692
|| || | || ||||| ||||| | |||||| |||||| ||| || || ||
Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 41113
Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752
|| || || |||||||| | | |||||||| || || || || || ||||| || ||
Sbjct 41114 CTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 41173
Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 25810
||||||||||| |||||||| || || ||||| |||| | ||| || |||||||
Sbjct 41174 TCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATAC--GCCGTCTTCAGTTTCAC 41231
Query 25811 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 25870
| || | || || |||||| |||||||||||| |||||||| |||||| || |
Sbjct 41232 GGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACA 41291
Query 25871 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 25930
| || |||||||| ||||||||| || |||||||| || ||||||||||| || || |
Sbjct 41292 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 41351
Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990
| ||||| || |||||||| || |||||||| | |||||||||||||||||| || ||||
Sbjct 41352 CTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTT 41411
Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050
|||||| ||||| ||||||||||| ||| ||||||| || || || ||||| ||||||
Sbjct 41412 GTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 41471
Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGT 26107
| | ||||| || | ||| |||| | || ||||||||||||| ||||||| ||
Sbjct 41472 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 41531
Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167
||||| | || | | ||||| || || | |||||| || || |||||||| || |
Sbjct 41532 AAGCT---ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 41588
Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227
||||||||| | | ||||||||||| | |||||||||||||| ||| || |||||||
Sbjct 41589 GCCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 41648
Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287
| || | | ||| |||| ||| ||||||||||| || | | || ||| | || |
Sbjct 41649 AACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 41708
Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347
| ||||| |||||||| ||||| || ||||| || || | || || || | || || |
Sbjct 41709 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCAG 41767
Query 26348 -TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 26406
| |||||||| | || |||||||||| || || ||||| || | || | |||
Sbjct 41768 CTTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGG 41827
Query 26407 TTGTTTGTACTTGTAACCCA 26426
|| | ||| || || | |||
Sbjct 41828 TTTTCTGTGCTAGTGATCCA 41847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151983039389676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |