Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3272 201 9e-47 >seq3272 Length=24018 Score = 201 bits (222), Expect = 9e-47 Identities = 427/631 (68%), Gaps = 11/631 (2%) Strand=Plus/Minus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 || ||||||| | ||| |||||||| || || | ||||| || ||||| || || | Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 | ||| || || |||| || | ||||| | | || || || ||||| || Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | ||||| ||| | | ||||| | ||| || || ||||| || | | Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCC 18669 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 || ||||||||||| | |||| ||||| || | ||||| |||| || || Sbjct 18668 ACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGA 18609 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 |||||||| | || ||||| || | ||||| || || ||| | || || | || Sbjct 18608 TTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCA 18549 Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168 ||| ||||||||| | ||| |||| | |||||| || ||| ||| |||| || || Sbjct 18548 TTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCC 18489 Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTC 30227 || ||||||| ||||||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 18488 CCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC 18429 Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287 || || | ||||||| | || ||| | ||| ||||||| || | | || Sbjct 18428 -AACCCTATTTTGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTT 18370 Query 30288 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347 || | || |||||||| || || || |||||||||| ||||||| |||| Sbjct 18369 GTCTTTCAATAGATTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGAC 18310 Query 30348 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGT 30403 || |||||| |||||||| ||||| | ||| |||||| ||| || |||||| | Sbjct 18309 CCCCCGCCAAAATACCCTCTTAGTCGTTAAGAGAGGAAACACATTGTTCC-TGAGGC--T 18253 Query 30404 ACATGG--CCTGAGAACCAAACACGGACAAG 30432 | || | ||| | |||||| ||||||| Sbjct 18252 AAATCGAAGCTGTGCTCCAAACTTGGACAAG 18222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588461862023