Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3272 201 9e-47
>seq3272
Length=24018
Score = 201 bits (222), Expect = 9e-47
Identities = 427/631 (68%), Gaps = 11/631 (2%)
Strand=Plus/Minus
Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868
|| ||||||| | ||| |||||||| || || | ||||| || ||||| || || |
Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
| ||| || || |||| || | ||||| | | || || || ||||| ||
Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || | ||||| ||| | | ||||| | ||| || || ||||| || | |
Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCC 18669
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048
|| ||||||||||| | |||| ||||| || | ||||| |||| || ||
Sbjct 18668 ACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGA 18609
Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108
|||||||| | || ||||| || | ||||| || || ||| | || || | ||
Sbjct 18608 TTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCA 18549
Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168
||| ||||||||| | ||| |||| | |||||| || ||| ||| |||| || ||
Sbjct 18548 TTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCC 18489
Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTC 30227
|| ||||||| ||||||||| |||||||||||||| ||||||||||| |||| |||||
Sbjct 18488 CCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC 18429
Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287
|| || | ||||||| | || ||| | ||| ||||||| || | | ||
Sbjct 18428 -AACCCTATTTTGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTT 18370
Query 30288 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347
|| | || |||||||| || || || |||||||||| ||||||| ||||
Sbjct 18369 GTCTTTCAATAGATTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGAC 18310
Query 30348 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGT 30403
|| |||||| |||||||| ||||| | ||| |||||| ||| || |||||| |
Sbjct 18309 CCCCCGCCAAAATACCCTCTTAGTCGTTAAGAGAGGAAACACATTGTTCC-TGAGGC--T 18253
Query 30404 ACATGG--CCTGAGAACCAAACACGGACAAG 30432
| || | ||| | |||||| |||||||
Sbjct 18252 AAATCGAAGCTGTGCTCCAAACTTGGACAAG 18222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408588461862023
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |