Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35 93.3 3e-14 seq2518 87.8 1e-12 >seq35 Length=30318 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 12428 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12487 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 12488 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12547 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| |||||| |||| Sbjct 12548 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCCACGTCCAG 12603 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 12604 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 10832 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 10891 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 10892 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 10951 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 10952 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 11007 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 11008 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 11060 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11119 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 11120 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11179 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 11180 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 11235 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 11236 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 11288 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11347 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 11348 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11407 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 11408 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 11463 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 11464 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 11516 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11575 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 11576 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11635 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 11636 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 11691 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 11692 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 11744 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11803 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 11804 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11863 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 11864 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 11919 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 11920 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 11972 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12031 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 12032 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12091 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 12092 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 12147 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 12148 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| ||||| || | || Sbjct 12200 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12259 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || ||||| || || | ||| | ||||||| Sbjct 12260 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12319 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| ||||| || || || | | | || || ||| ||| || |||| Sbjct 12320 TTGTCCTGGATCTTCTGCTTCAC-GTTCTC---GATCGTGTCGCTGGGCTCTACGTCCAG 12375 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || || || || || ||||| Sbjct 12376 CGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 >seq2518 Length=13831 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || |||||||||||||| || || ||| || || || || || || | Sbjct 5330 CGCCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTG 5271 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| ||||| || || || || || ||||| ||||||| | Sbjct 5270 ACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAG 5211 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----C 48713 | | |||||||||||| |||||||| || || | | | || || ||| | Sbjct 5210 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCAC-GTTCTC---GATGGTGTCGCTGGGC 5155 Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || | || || || || ||||||| || || || || || |||||| Sbjct 5154 TCCACATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATC 5101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910435696873