Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq5733 695 0.0 >seq5733 Length=57551 Score = 695 bits (770), Expect = 0.0 Identities = 719/940 (76%), Gaps = 6/940 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||||||||| || |||||||| || | |||| ||| |||||||||| Sbjct 41816 TCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCA 41757 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| |||||||||||||| ||||||||||||||| | ||||| || || || | Sbjct 41756 TCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGAT 41697 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 ||||| | || || |||||||| ||| | ||||| || |||||||||| || ||||||| Sbjct 41696 CACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTG 41637 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || |||||||||| || | |||||||| || || | || |||||| | || || |||| Sbjct 41636 GTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTG 41577 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||||||||||| || |||||| | | || | | ||| || ||| Sbjct 41576 GTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTG 41517 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | ||||||||| ||||| ||||| |||||||||||||| | || || | ||| || | Sbjct 41516 AATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTC 41457 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| ||||||||| || || ||||| || || || | || |||||| ||||||| Sbjct 41456 CAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTG 41397 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||||||||||||||| |||| |||||| || ||||||||||| | Sbjct 41396 ATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAAC 41337 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 ||||||| || |||||||| ||||||||| ||| || || ||||| || ||||| || Sbjct 41336 ACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTT 41277 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||||||||||||||| || ||| | | ||| | |||||| || Sbjct 41276 TATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACG 41217 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||||||||||| || ||||||||||||||||| ||||||||||| || | Sbjct 41216 GCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAG 41157 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || |||||||| || || |||||||| || || |||||||||||||||| Sbjct 41156 CTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTG 41097 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||||||| || || || | |||||||| ||||| | |||| Sbjct 41096 CTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTG 41037 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | ||||||||||| ||| | ||||||||||||||||||||||| || ||||| Sbjct 41036 TTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTC 40977 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || ||||| |||||||| || || | ||| | || | | ||||||| Sbjct 40976 AAGGTCGT---GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGG 40920 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 |||| |||||||| ||||| || ||||||||||| || || Sbjct 40919 AAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553044348760440