Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq5733 661 0.0 seq225 554 5e-153 >seq5733 Length=57551 Score = 661 bits (732), Expect = 0.0 Identities = 724/956 (76%), Gaps = 10/956 (1%) Strand=Plus/Minus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 162979 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAG 163038 | ||| |||||| |||| ||| |||| || || || || || || || || |||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 163039 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 163098 || || ||||| ||||| | || || |||||||| ||| | ||||||||| |||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 163099 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 163158 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 163159 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 163216 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 163217 CATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTG 163276 | || ||||||||||||||||||||| || || ||||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 163277 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 163336 |||| | ||| || || || || |||||||| ||||| ||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 163337 AAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTG 163396 ||||| |||||||| | ||||| | || || ||||| || ||||||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 163397 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTG 163456 | ||||||||||| |||||||| || |||||||| ||||||||| || || ||||||| Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 163457 TCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCC 163516 | || |||||||| | ||| || ||||| || |||||| || ||| | ||| Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 163517 GTGAGACGACTGAA-ACTGAGTCACAA--AACTATGGTTACAAGTTTGGTCAAGAAGAAG 163573 |||| || |||| || | || | ||||| |||||||| || || |||||||||| Sbjct 41231 GTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 163574 AGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCAT 163633 | || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 163634 CATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCT 163693 ||||||||| | | | ||||||||| | || |||||||| || || || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 163694 GGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 163753 |||| ||||| || || || || || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 163754 AGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCG 163813 | || | ||||| |||| ||||||||| ||||||||||||| ||| | | ||||| | Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 163814 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 554 bits (614), Expect = 5e-153 Identities = 731/1011 (72%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | ||||||||||| || || ||| | || ||||| || | || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 164679 CCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 164737 ||| || || | ||| || |||| || ||| | || || || ||||||| || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 164738 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGT 164797 ||| || ||||| | || ||||| ||| | ||||| |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || ||||| || ||| ||| |||| ||| ||||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTAT 164977 ||| || | ||||||| ||| | || || || ||| | || ||||| | ||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTAT 38193 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 ||||| ||||| || ||||| |||||||| |||||||| || ||||| || ||| | Sbjct 38194 TCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCTT 38253 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || || || || || | |||||||| |||||||| |||||||| ||||| || Sbjct 38254 AATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTAT 38313 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 || |||| | || ||| | ||||| ||||| |||||||| || || || |||||||| Sbjct 38314 TTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATAT 38373 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 ||||||||| ||||| || || ||||| ||||| ||||||| |||||||||| |||||| Sbjct 38374 GATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAGT 38433 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 ||||||||| ||| || ||||| || ||||| || || |||||| | || Sbjct 38434 AGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAAC 38493 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 ||| |||||| |||||||| ||||| || || || | |||||||| || || || || Sbjct 38494 ACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGG 38553 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 | || || || ||||| || ||||||||||| |||||||| ||||| ||||| | || Sbjct 38554 TGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGG 38613 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||||| ||| |||| ||| ||||| | || | || | | || |||||||| Sbjct 38614 TTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTT 38673 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| ||| ||| | | || || ||||||||||||||||| || |||||||| ||||| Sbjct 38674 CGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 38733 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 ||| |||| |||||||| | | | ||| |||| | || ||||| |||||||| Sbjct 38734 TATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAA 38793 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 165628 ||| | |||||||| || || || || | || |||||||||||||| || Sbjct 38794 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 38844 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 164040 TTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATA 164099 || || | ||||| || || |||||||| ||||||| || |||||| ||| |||| Sbjct 18852 TTATCGACTGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAAC 18911 Query 164100 TTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAA 164159 | ||| ||||| | | ||| |||| || | ||||| || | |||| ||| | Sbjct 18912 TACCTTATTCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTA 18971 Query 164160 CTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGC 164219 || ||||||| ||| || || || |||| |||||||| |||||| |||||||| Sbjct 18972 CTATTGATCAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTAT 19031 Query 164220 TTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTGGTTACTGATCAAGAGGA 164274 | || || ||||||||||| ||||||||||| | | || |||||||||| Sbjct 19032 TAACTTGCGTAGCATATCCTGCATCTGATTGTCAAATTTTAACAAATCAAGAGGA 19086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563168408257880