Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3524 288 2e-72
>seq3524
Length=35516
Score = 288 bits (318), Expect = 2e-72
Identities = 1102/1713 (64%), Gaps = 73/1713 (4%)
Strand=Plus/Plus
Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791
||| || |||||||| |||| |||| || ||||||||||||||| | | ||
Sbjct 10348 GTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTC 10407
Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTG 212851
|||||| || |||| || | | ||||||||| || || | | | | |||
Sbjct 10408 TTTGAGCTCACGGGGGATGCTTGCTACGTTCTGCACCGAGCCGCGATTACCCATGATCTG 10467
Query 212852 CAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGT 212910
||| | || | ||||| ||||| | | || |||| || ||||| ||
Sbjct 10468 GTTGCGGACCTCGGCATTCCAAAGGCCGC-GCTCGATCAGGTCGCCGAGCAGGTACTTGT 10526
Query 212911 TGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCT 212970
|||| || || || || | ||||| | | | || | ||| || ||| ||||||
Sbjct 10527 TGACGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCT 10586
Query 212971 CGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCA 213030
| | | ||||||||| ||||| || || || ||| ||| ||||||||||| |||| ||
Sbjct 10587 CCACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCA 10646
Query 213031 GGAGACTGTTCCTCACTCCGTGCTCGCCGA---TGAGGCGCCGAAGCTCTGCCCAGTCCC 213087
| || || | ||| || ||||| || ||| |||| | || | ||||| ||||
Sbjct 10647 GCAGGGAATTGCGCACGCCATGCTCCTGGACTTTGACGCGCAG--GC-CGGCCCAATCCC 10703
Query 213088 ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGC 213147
| | || || ||||| ||||||||| ||||| |||| ||| ||||
Sbjct 10704 AGCGCGTGGAGGGGG---------TCACGCCCCACATGTCGAACTGGAAGACGCCCTTGC 10754
Query 213148 TCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACG 213207
| | ||| || | | | ||| ||||| | || | | || | || ||| |
Sbjct 10755 TGATGGGCGAACCGGAGAAGGTCTCGTACGGGCCCTCCTTCATTGCGATTTCCATGGAGG 10814
Query 213208 CCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTG 213267
| | | ||| || |||| ||||| || || | ||| | || |||| || ||||
Sbjct 10815 CTTCGACGGCGCCGAAGTACATGGTCTCGAAGACGTCCTTATTCAGCTGGAGCGCGTCTG 10874
Query 213268 GGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTGGACCCCGAT 213325
||| |||||| ||| ||| |||| |||| |||| ||||| || |||||
Sbjct 10875 CCGACTCGAAGGGGTAGCGCATT--TTGATGAACGCATCCGCCAAGCCCTGCACGCCGAT 10932
Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382
||||| ||| || || | || ||| || ||| ||| ||| |||| ||||||||||||
Sbjct 10933 GCCGACGGGCCTATGCCGCATGTTGGAGCGCTT--AGC-CTCTTCCACGGGGTAAAAGTT 10989
Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442
| |||||| | |||||||||||| || |||| ||||||| | | ||| ||
Sbjct 10990 GATGTCGATAACACGGTTGAGGTTGCGCGTCACCACCTTGGTGATCTCGTAGAGGCGCTG 11049
Query 213443 --------------GTGATTGAACAC-----GTAGCCCCCGTCCTGCACAAACTCAGGCA 213483
| | || | | | || | || ||| |||| ||| | | |
Sbjct 11050 TAGGTCATAAGAGGGGGCTTTACCGCTGCCAGTTGGTTCC-TCCCGCACGAACGCCGAGA 11108
Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543
|| || ||| |||||||| ||||| ||||| | | | || ||||| |||||||
Sbjct 11109 GGTTGACAGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCT 11168
Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603
| |||||||||||| | ||| ||||| ||||| ||||| ||||| | | | |
Sbjct 11169 CCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTT-GAGATTG 11227
Query 213604 CAGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662
||| ||||||| ||||||| ||||| | || ||||| | ||| || ||| | |
Sbjct 11228 CAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCA 11287
Query 213663 CTCCAGAGGTACCTGGCCTTGACCACC-----CGCCTGACAGCTCCGGGCGTAGCCTCGT 213717
||| || | | |||||||| |||| ||||| | ||| |||||
Sbjct 11288 AACCACAGCTGCTGGGCCTTGATCACCTTGCGCGCCTTGCCACTCTT--------CTCGT 11339
Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATG 213777
|| || || |||| || ||||| | || || || |||| || || ||
Sbjct 11340 ACGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGT 11399
Query 213778 CGGGACACATGAGGCTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGG 213836
||| || | || |||||| ||||| | ||| || | |||||||||||| || ||
Sbjct 11400 TGGGGCAGAACAGAGACCAGTCGCCGTCGT-TCTCCACGCGCTGCATGAACAGATCAGGC 11458
Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT-TTGCG 213895
||| || ||| ||||| ||| | || || | || | || | | | | || |||||
Sbjct 11459 GTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGC-TCCAGCTCATTGCCGTGGTTCTTGCG 11517
Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955
|||||| || || || ||||| || |||||||| ||||||| ||||||||| || | |||
Sbjct 11518 CAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCC 11577
Query 213956 CGGCCTCTTGCCGCC---CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGAC 214012
| | |||||| || ||||||||| | |||| |||||||| ||||| |
Sbjct 11578 CTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCAT 11637
Query 214013 GGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG 214072
||| || | |||||||| ||||| | || || |||||| | |||| |
Sbjct 11638 GGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGAT 11697
Query 214073 GTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCAC 214132
||| || |||| || || ||||| ||| |||||||||| || || || | |
Sbjct 11698 GTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAG 11757
Query 214133 AGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAG 214192
||| || ||| ||| | ||| ||| || | | | |||| | ||||||| |||||
Sbjct 11758 AGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAG 11817
Query 214193 CTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTT 214252
||| |||| | || ||| | |||||| || || || |||| || | | | ||| |
Sbjct 11818 CTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTG 11877
Query 214253 AGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGC 214312
|| | ||| |||||||||| | | | | | ||| | ||| ||||| | ||
Sbjct 11878 GGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGC 11937
Query 214313 GCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC--CTTGAGCAGG 214370
| ||| | |||||||||||| | ||| || | | | | || ||||||||||
Sbjct 11938 TACGCGCATGATCATGTGCTGGGGTCGCTCCAT--GACGATGCCGTCCATCTTGAGCAGG 11995
Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403
||||| |||||| |||||||| || || |||
Sbjct 11996 TAGGACTTCTCCAGCGTCTTGAAACCGAAATAG 12028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931464670019840
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