Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3524 288 2e-72 >seq3524 Length=35516 Score = 288 bits (318), Expect = 2e-72 Identities = 1102/1713 (64%), Gaps = 73/1713 (4%) Strand=Plus/Plus Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||| || |||||||| |||| |||| || ||||||||||||||| | | || Sbjct 10348 GTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTC 10407 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTG 212851 |||||| || |||| || | | ||||||||| || || | | | | ||| Sbjct 10408 TTTGAGCTCACGGGGGATGCTTGCTACGTTCTGCACCGAGCCGCGATTACCCATGATCTG 10467 Query 212852 CAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGT 212910 ||| | || | ||||| ||||| | | || |||| || ||||| || Sbjct 10468 GTTGCGGACCTCGGCATTCCAAAGGCCGC-GCTCGATCAGGTCGCCGAGCAGGTACTTGT 10526 Query 212911 TGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCT 212970 |||| || || || || | ||||| | | | || | ||| || ||| |||||| Sbjct 10527 TGACGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCT 10586 Query 212971 CGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCA 213030 | | | ||||||||| ||||| || || || ||| ||| ||||||||||| |||| || Sbjct 10587 CCACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCA 10646 Query 213031 GGAGACTGTTCCTCACTCCGTGCTCGCCGA---TGAGGCGCCGAAGCTCTGCCCAGTCCC 213087 | || || | ||| || ||||| || ||| |||| | || | ||||| |||| Sbjct 10647 GCAGGGAATTGCGCACGCCATGCTCCTGGACTTTGACGCGCAG--GC-CGGCCCAATCCC 10703 Query 213088 ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGC 213147 | | || || ||||| ||||||||| ||||| |||| ||| |||| Sbjct 10704 AGCGCGTGGAGGGGG---------TCACGCCCCACATGTCGAACTGGAAGACGCCCTTGC 10754 Query 213148 TCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACG 213207 | | ||| || | | | ||| ||||| | || | | || | || ||| | Sbjct 10755 TGATGGGCGAACCGGAGAAGGTCTCGTACGGGCCCTCCTTCATTGCGATTTCCATGGAGG 10814 Query 213208 CCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTG 213267 | | | ||| || |||| ||||| || || | ||| | || |||| || |||| Sbjct 10815 CTTCGACGGCGCCGAAGTACATGGTCTCGAAGACGTCCTTATTCAGCTGGAGCGCGTCTG 10874 Query 213268 GGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTGGACCCCGAT 213325 ||| |||||| ||| ||| |||| |||| |||| ||||| || ||||| Sbjct 10875 CCGACTCGAAGGGGTAGCGCATT--TTGATGAACGCATCCGCCAAGCCCTGCACGCCGAT 10932 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 ||||| ||| || || | || ||| || ||| ||| ||| |||| |||||||||||| Sbjct 10933 GCCGACGGGCCTATGCCGCATGTTGGAGCGCTT--AGC-CTCTTCCACGGGGTAAAAGTT 10989 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | |||||| | |||||||||||| || |||| ||||||| | | ||| || Sbjct 10990 GATGTCGATAACACGGTTGAGGTTGCGCGTCACCACCTTGGTGATCTCGTAGAGGCGCTG 11049 Query 213443 --------------GTGATTGAACAC-----GTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 | | || | | | || | || ||| |||| ||| | | | Sbjct 11050 TAGGTCATAAGAGGGGGCTTTACCGCTGCCAGTTGGTTCC-TCCCGCACGAACGCCGAGA 11108 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 || || ||| |||||||| ||||| ||||| | | | || ||||| ||||||| Sbjct 11109 GGTTGACAGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCT 11168 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | |||||||||||| | ||| ||||| ||||| ||||| ||||| | | | | Sbjct 11169 CCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTT-GAGATTG 11227 Query 213604 CAGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 ||| ||||||| ||||||| ||||| | || ||||| | ||| || ||| | | Sbjct 11228 CAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCA 11287 Query 213663 CTCCAGAGGTACCTGGCCTTGACCACC-----CGCCTGACAGCTCCGGGCGTAGCCTCGT 213717 ||| || | | |||||||| |||| ||||| | ||| ||||| Sbjct 11288 AACCACAGCTGCTGGGCCTTGATCACCTTGCGCGCCTTGCCACTCTT--------CTCGT 11339 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATG 213777 || || || |||| || ||||| | || || || |||| || || || Sbjct 11340 ACGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGT 11399 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGG 213836 ||| || | || |||||| ||||| | ||| || | |||||||||||| || || Sbjct 11400 TGGGGCAGAACAGAGACCAGTCGCCGTCGT-TCTCCACGCGCTGCATGAACAGATCAGGC 11458 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT-TTGCG 213895 ||| || ||| ||||| ||| | || || | || | || | | | | || ||||| Sbjct 11459 GTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGC-TCCAGCTCATTGCCGTGGTTCTTGCG 11517 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 |||||| || || || ||||| || |||||||| ||||||| ||||||||| || | ||| Sbjct 11518 CAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCC 11577 Query 213956 CGGCCTCTTGCCGCC---CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGAC 214012 | | |||||| || ||||||||| | |||| |||||||| ||||| | Sbjct 11578 CTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCAT 11637 Query 214013 GGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG 214072 ||| || | |||||||| ||||| | || || |||||| | |||| | Sbjct 11638 GGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGAT 11697 Query 214073 GTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCAC 214132 ||| || |||| || || ||||| ||| |||||||||| || || || | | Sbjct 11698 GTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAG 11757 Query 214133 AGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAG 214192 ||| || ||| ||| | ||| ||| || | | | |||| | ||||||| ||||| Sbjct 11758 AGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAG 11817 Query 214193 CTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTT 214252 ||| |||| | || ||| | |||||| || || || |||| || | | | ||| | Sbjct 11818 CTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTG 11877 Query 214253 AGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGC 214312 || | ||| |||||||||| | | | | | ||| | ||| ||||| | || Sbjct 11878 GGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGC 11937 Query 214313 GCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC--CTTGAGCAGG 214370 | ||| | |||||||||||| | ||| || | | | | || |||||||||| Sbjct 11938 TACGCGCATGATCATGTGCTGGGGTCGCTCCAT--GACGATGCCGTCCATCTTGAGCAGG 11995 Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||||| |||||| |||||||| || || ||| Sbjct 11996 TAGGACTTCTCCAGCGTCTTGAAACCGAAATAG 12028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931464670019840